<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09828

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMAAVKASEARGDPPLLQVVELSRIVAVEGAGTLSSADLARILVSNLCFAHNSPSLWKLLGQAVVSRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAIDGPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERFSSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSATSTPGSMSNYLAHMSTLNEILLGSRCCCGVNANM
Length643
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.05
Grand average of hydropathy0.144
Instability index43.15
Isoelectric point6.90
Molecular weight69728.29
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.45|      42|     156|     367|     416|       1
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  367-  416 (54.43/54.99)	LRLVQRARepLEGPIphLDArlcmLLALIPLSVAAILQEESDML.GAEGNK
  528-  570 (66.02/39.53)	LNFMKGSR..LSGPL..IDA....LVASPASSVAELDKLYSIALnGSEEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.43|      32|      41|     196|     229|       6
---------------------------------------------------------------------------
  196-  229 (48.53/40.53)	NQNEHREQLRRKNTLI.....ALDVLhmMTADRKIQSFL
  235-  271 (44.90/30.00)	NMPERFSSLRQRLSSIeaqkvSLETL..LPSGHKINELL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09828 with Med33 domain of Kingdom Viridiplantae
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