<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09826

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMAAVKASEARGDPPLLQVVELSRIVAVEGAGTLSSADLARILVSNLCFAHNSPSLWKLLGQAVVSRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAIDGPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERFSSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSATSTPGSMSNYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPICEAFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASPLSGLCNKNPVHQVANKILNMICRKMNKEAVPFVLEAVLTACAHGQLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRTSPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1265
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.191
Instability index47.88
Isoelectric point8.00
Molecular weight137856.97
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09826
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.70|      44|     140|     995|    1043|       4
---------------------------------------------------------------------------
  371-  398 (36.83/14.58)	....................QR.AREPLEG.PIPHLDARLCMLLALIPLS
  400-  440 (37.87/18.34)	AAILQEesdmlGAEGNKILPQRqGLISSLQDLIQYSGLLVP.........
  995- 1038 (75.00/55.49)	SSFLQS.....SSSGSDIIANR.GVGALLGDSITNQGLRLPMAPGFIYLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.28|      47|     195|     742|     792|       5
---------------------------------------------------------------------------
  742-  792 (78.59/69.84)	DSCNDMGSVNEVPaqLIYIDSFPKLRAWY.FQNQACIASPLSGlcNKNPVHQ
  941-  988 (85.69/61.26)	ENCAGGSSWPSMP..IIGALWTQKVRRWHdFIVLSCMRSPFGR..DKDAVAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.25|      36|     369|     659|     703|       6
---------------------------------------------------------------------------
  659-  703 (57.40/58.58)	CEAFgsippppnHKSTILGEISVYTVFSCAFlCLLRLWKFYRPPQ
 1040- 1075 (70.85/45.37)	CRTF........HDTYFVSEVILKQVIEWAH.KLANGWCFNGPPQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09826 with Med33 domain of Kingdom Viridiplantae
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