<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09822

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMAAVKASEARGDPPLLQVVELSRIVAVEGAGTLSSADLARILVSNLCFAHNSPSLWKLLGQAVVSRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAIDGPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERFSSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSATSTPGSMSNYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPICEAFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASPLSGLCNKNPVHQVANKILNMICRKMNKGVVSSSTLSSTSSSSVSGSSVSASDDPCQRPAVSGWEFLEAVPFVLEAVLTACAHGQLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRTSPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGLFRVLNVPAVPEGDHTEGPGWAGLPRRHGHRKRQVHLLSDSPTGYEENSCRCKPSSVPDARPGYEFKTKRCEI
Length1312
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.116
Instability index49.83
Isoelectric point7.83
Molecular weight142442.44
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09822
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1063.98|     299|     334|     616|     949|       1
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  419-  613 (192.38/104.13)	.........................................................................................................................................................PQRQGLISSLQDL....IQYSGLL......VPPS.SVV...NA................ANAAASKA.AIFKANYEAG..VGNSSMMDQTDSSmKAAGNMLHLIIEACiSRKL.IDTSAYLWPGYVVPSGTLKDTALPQESPwLNFMKGS.............RlsgPLIDALVASP.ASSV....AELDK.LYS..IALNGSEEEKTaaakilcG.ASL.....VRGwNIQEHVVGM..VVKlLSASLPSDSATSTP
  616-  949 (480.27/361.59)	MSNYLAHMSTLN.....EILLGVsYGDAihilslygmvpdvavalMPICEAFGSIPPPPnhkstILGEISVYTVFS.CAFLCLlrlwKFYRPPqeyclAGRGGSVKLELTLD.YLLLMHNNHiefSNSS.ASNR.......DSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACI......ASPL.SGLCNKNP................VHQVANKILNMICRKMNKG..VVSSSTLSSTSSS.SVSGSSVSASDDPC.QRPA.VSGWEFLEAVPFVLEAVLTACAHGQLSS.RDLTTSL.............R...DLVDFLPASL.AAIVSYFSAEITRGIWKP.VPMNGIEWPSP.......G.ASL...HSIEA.EVKEILASA..GVQ.INSCYPRGVPPMLP
  952- 1297 (391.33/238.80)	MAALVSLTITFKldrslEYIQGV.IGQA.................LENCAGGSSWPSMP.....IIGALWTQKVRRwHDFIVL....SCMRSP.....FGRDKDAVAQLIQScFSSFLQSSS...SGSDiIANRgvgallgDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILkqviewAHKLaNGWCFNGPpqlksgrtplscaasmVQQVALLGGGLLC..IAGGplVVQ..VLYEETLP.TL...LLSARDQSL.KGPGpVSS..TLQG..YAMANMLFYCG.SLLWG.ADRTSPVmklsflsrrprvvR...THMDFIAGVLdGHILLGCDPGLFRVLNVPaVP.EGDHTEGP.......GwAGLprrHGHRK.RQVHLLSDSptGYE.ENSC..RCKPSSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.74|      27|     160|      82|     108|       2
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   82-  108 (47.69/28.87)	LPQRRAQPEAYRLYLELL..KCHVTSSLL
  243-  271 (39.05/22.41)	LRQRLSSIEAQKVSLETLlpSGHKINELL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09822 with Med33 domain of Kingdom Viridiplantae
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