<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09806

Description U-box domain-containing protein 35
SequenceMATQEETMVTESSPSSDSSITIGLAVSSSKSSKYAVNWALKNFGTRQRIRFMLIHVRQKVTLVPTPMGNYVPVDQVRDDIASAYEKEVECEAQNMLLMYKNMCDGKVEAEVLVVKGDDVAETISGVVLACQIHKLFVGVSSHSNFIRKFKGTRMFSRICKCVPSFCMVYAISKGGLSMVYSLGSESDNSSKILQVNESSNSELYSDKSSVSGKVYGIYIALSNSLDGNLDSPPSTHHNWSQSLQEHLSRSTSSTIGKDQRISPCTDGSSNLGILDKTPTMSRALQELMLLEDEASAPCATGQISASTNLPLSDKALTVKSALQELMLSEDKASTHCASGQISGSSNFPISYKAPTVSNALQELMLSEDKDNANFELEKLRIKLEHMKGVCKLVQDESTSASQQMIDLVERRAQEEARLAEVRQRINITTEAARKEREQRYAIEAQARHVRDLAKEEALKKQNLQLRLSREADNVQKLEKLLELGGKSYTVFTWEEMESATSSFSEALKIGSGAFGTVYKGKVHHKTVAIKVLKSDDSHIAKHFEKELEILGKTRHRHLLLLLGACLDRACLVYEYMENGSLEDRLQCKGDTAPLPWYHRFRIAWEITLALIFLHSSKPKPIIHRDLKPANILLDRNFTSKIGDAGLATFLPLRDTSSTHTIRKSTDLVGTLFYLDPEYQRTGQVSAKSDVYALGMVFLQLLTAKSPIGLADTAERAMEEDHLIDILDQRAGNWPVREAHELTQLGLRCLEMRSKDRPDLKSKVLVVLERLNNLASTVYHSVQPIPTAPPSHFICPILKRVMQDPCIASDGYSYERVAIEMWLNENDVSPLTKARLPDKNLVPNLALICLINSWKGEVGATGPIR
Length864
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.287
Instability index39.99
Isoelectric point6.92
Molecular weight96061.82
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09806
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.62|      37|      37|     295|     331|       1
---------------------------------------------------------------------------
  263-  293 (55.28/35.92)	..PCTDG....SSNLGILDKTPTMSRALQELMLLEDE
  295-  331 (70.19/47.66)	SAPCATGQISASTNLPLSDKALTVKSALQELMLSEDK
  333-  369 (74.15/50.77)	STHCASGQISGSSNFPISYKAPTVSNALQELMLSEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.85|      42|     336|     164|     213|       2
---------------------------------------------------------------------------
  169-  213 (62.82/56.10)	YAISkggLSMVYSLGSESDN.SSKILQVNESSNSELYSDKSSVSGK
  215-  257 (69.04/39.65)	YGIY...IALSNSLDGNLDSpPSTHHNWSQSLQEHLSRSTSSTIGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.90|      26|     456|      78|     103|       4
---------------------------------------------------------------------------
   78-  103 (48.47/34.47)	DD..IASAYEKEVEC...EAQNMLLMYKNMC
  535-  565 (36.43/24.09)	DDshIAKHFEKELEIlgkTRHRHLLLLLGAC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09806 with Med32 domain of Kingdom Viridiplantae
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