<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09790

Description Mediator of RNA polymerase II transcription subunit 23
SequenceMDGGHTTRHPMSPAISASTVLPQQRQMQPHHHPARPAIADLFTLYLGMNSKQRAEDPLRESSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDAEQLQAITESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNTVSSIEAPMVQGVSVTGGGSVTPSSAITMPNAPNFHQSNPASPLSVMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRGAEASYLHHLSCRIILAGLEFNLKPATHAVIFQHMVNWLVNWDQRPQGMDETDTMQTCRLEKPLHEWMHLCLDVIWILVNEDKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLKLTNSVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVDTTRKIISFHKEDKSLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMMKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPSERIMMMRETYPLSMSLLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLIAPHSLFRPHFTALTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRVDKRGLAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTVVDVLLHHIQCEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRVKNFCNTRSPEHWLKNQHPKRAELQKALGSHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSICPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQPGGVGNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVPAAQIVSSLVQIIAHVQAILIQSNSGQGMSGGLGQSSGLPTSPSGAAESSGPNQANSAATGINATNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADGSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNPQVSNPNPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVIEILRPDVQHLLSHLKIDPTSSIYAATHPKLVQNPS
Length1577
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-0.088
Instability index46.42
Isoelectric point7.11
Molecular weight176647.53
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.99|      19|      22|    1102|    1123|       1
---------------------------------------------------------------------------
 1102- 1123 (22.85/28.55)	YRLIEndATDIADrVLA.FYSSL
 1126- 1145 (30.14/20.69)	FHPLR..FTFVRD.ILAyFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.11|      17|      18|    1167|    1183|       2
---------------------------------------------------------------------------
 1167- 1183 (31.03/20.43)	ESFAKYLVSSNSSICPP
 1185- 1201 (30.08/19.55)	EYFANLLLNLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.02|      16|      18|     388|     403|       3
---------------------------------------------------------------------------
  388-  403 (30.67/16.83)	YPSIAGESV..TNLRYS.P
  406-  424 (21.36/ 9.61)	YPSVLGEPLhgEDLANSiP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.27|      16|      18|    1285|    1300|       4
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 1285- 1300 (29.56/23.31)	LIQSNSGQGMSGGLGQ
 1304- 1319 (29.71/23.48)	LPTSPSGAAESSGPNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.57|      18|      22|     176|     197|       8
---------------------------------------------------------------------------
  176-  193 (34.68/23.17)	ITMPNAPNFHQSNPA..SPL
  199-  218 (27.89/ 8.88)	IGSPTQSGIDQPVGAnvSPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      14|      23|     298|     313|       9
---------------------------------------------------------------------------
  298-  313 (25.48/21.77)	CRLekPLHEWMHLCLD
  324-  337 (27.95/16.89)	CRI..PFYELVRCNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      22|     848|     857|      10
---------------------------------------------------------------------------
  848-  857 (18.02/ 9.05)	YLQPLLEQIM
  871-  880 (19.37/10.31)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.72|      10|      16|    1219|    1228|      11
---------------------------------------------------------------------------
 1219- 1228 (19.16/11.14)	NKHHASSQ.PG
 1236- 1246 (14.56/ 6.44)	QRAFYQNQdPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.89|      10|      18|    1053|    1063|      12
---------------------------------------------------------------------------
 1053- 1063 (17.92/13.93)	SPEHWlKNQHP
 1074- 1083 (20.97/11.34)	SHLSW.KDRYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.70|      17|      23|    1397|    1413|      15
---------------------------------------------------------------------------
 1397- 1413 (30.59/17.27)	ALLDPTWAS..Q...DNTSTAI
 1418- 1439 (20.11/ 8.91)	ALLHSFFSNlpQewlESTHTVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.85|      12|      23|     436|     447|      17
---------------------------------------------------------------------------
  436-  447 (24.35/16.43)	CLRHALR..TTP....SP
  459-  476 (14.50/ 6.17)	CYRSQSQqsSTPgavfSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.74|      13|      23|    1348|    1360|      18
---------------------------------------------------------------------------
 1348- 1360 (23.37/12.90)	IQACGLLLAQLPP
 1374- 1386 (27.37/16.45)	IKDCWWLADGSRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.14|      10|      23|     904|     913|      19
---------------------------------------------------------------------------
  904-  913 (18.52/11.91)	QCNQLLSPSA
  928-  937 (19.62/13.11)	QHRQYLCAGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09790 with Med23 domain of Kingdom Viridiplantae
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