<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09774

Description Mediator of RNA polymerase II transcription subunit 23
SequenceMDGGHTTRHPMSPAISASTVLPQQRQMQPHHHPARPAIADLFTLYLGMNSKQRAEDPLRESSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDAEQLQAITESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNTVSSIEAPMVQGVSVTGGGSVTPSSAITMPNAPNFHQSNPASPLSVMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRGAEASYLHHLSCRIILAGLEFNLKPATHAVIFQHMVNWLVNWDQRPQGMDETDTMQTCRLEKPLHEWMHLCLDVIWILVNEDKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVDTTRKIISFHKEDKSLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMMKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPSERIMMMRETYPLSMSLLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLIAPHSLFRPHFTALTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRVDKRGLAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTVVDVLLHHIQCEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRVKNFCNTRSPEHWLKNQHPKRAELQKALGSHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKVTLLPFCIPFLAIFHKSGWNLLILSSNTFGQSIQLPC
Length1235
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-0.081
Instability index45.59
Isoelectric point7.14
Molecular weight140594.17
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09774
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     330.34|     104|     295|     591|     707|       1
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  591-  707 (159.26/158.23)	IGPQSILLDFISSSQtlRIWS......FNTSIREHLNSDQLQKGKQIDEWwkQMMKASgerMIDFTN..LDERATGMFWVLSFTMAQPACEAVM...NWFTSAGMADlIQGPNMqpsERImmMRETYP
  883-  997 (171.08/124.15)	IYLQPLLEQIMATSQ..HTWSektlryFPPLIRDFLMGRVDKRGLAIQAW..QQAETT...VINQCNqlLSPSAEPNYVMTYLSHSFPQHRQYLcagAWMLMNGHLE.INSANL...ARV..LREFSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.54|      42|     347|     383|     427|       2
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  383-  427 (63.81/46.81)	FLSQSYPSIAgESVTNLRYSPITyPSVLGEPlHGEDLANSIP....KGG
  733-  778 (70.73/38.70)	FLGQAVPSIA.MVETYVRLLLIA.PHSLFRP.HFTALTQRSPsilsKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.88|      60|     178|      10|      69|       3
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   10-   69 (105.85/69.43)	PMSPAISASTV.LPQQRQM.QPHHHPARPAIADLFTLYLGMNSKQRAEDPLR..ESS..NKLQKRV
  189-  254 (84.03/53.51)	PASPLSVMNTIgSPTQSGIdQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRgaEASylHHLSCRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.66|      18|      23|     430|     447|       4
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  430-  447 (34.54/19.58)	WERAL...RCLRHALRTTPSP
  450-  470 (30.12/16.15)	WRRVLlvaPCYRSQSQQSSTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.43|      14|      23|     298|     313|       5
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  298-  313 (25.48/20.05)	CRLekPLHEWMHLCLD
  324-  337 (27.95/15.58)	CRI..PFYELVRCNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.60|      36|     154|    1022|    1058|       8
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 1022- 1058 (57.56/40.71)	GHLAQDLLSKaITNLSFFIWTH.ELLPLDILLLALIDR
 1153- 1171 (22.11/ 8.57)	..............LAFY...S.SLLAFHPLRFTFV.R
 1179- 1214 (56.93/35.68)	GHLPIKLIGR.ILNL.LGVSTKvTLLPFCIPFLAIFHK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09774 with Med23 domain of Kingdom Viridiplantae
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