<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09769

Description 40S ribosomal protein S4-3
SequenceMAVPPCISPVTGPSPSHVMLVPCLLPHRPTSPATRKQLDASPSQSSIAAAQLVPDILLSRDSRVLMIYKSLLYGKSAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTTLPQESPWLNFMKGSRLSGPLIDALVASPASRCFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPFIKANDTIKIDLETNKIMDFFKFDVSNVVMVTGGRNTGRVGVIKNWEKHKGSFEVIDVLLGAFCMLCLVFLLFVVQENIEWNSNLVVAKVWRLEFI
Length275
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.09
Grand average of hydropathy0.172
Instability index43.96
Isoelectric point9.24
Molecular weight30529.57
Publications
PubMed=19965430

Function

Annotated function 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
cytosolic small ribosomal subunit	GO:0022627	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central
rRNA binding	GO:0019843	IEA:UniProtKB-KW
structural constituent of ribosome	GO:0003735	IBA:GO_Central
GO - Biological Process
translation	GO:0006412	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats
>MDP09769
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.98|      11|      15|       5|      15|       1
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    5-   15 (23.72/10.93)	PCISPVTGPSP
   22-   32 (24.26/11.31)	PCLLPHRPTSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09769 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA