<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09769

Description 40S ribosomal protein S4-3
SequenceMAVPPCISPVTGPSPSHVMLVPCLLPHRPTSPATRKQLDASPSQSSIAAAQLVPDILLSRDSRVLMIYKSLLYGKSAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTTLPQESPWLNFMKGSRLSGPLIDALVASPASRCFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPFIKANDTIKIDLETNKIMDFFKFDVSNVVMVTGGRNTGRVGVIKNWEKHKGSFEVIDVLLGAFCMLCLVFLLFVVQENIEWNSNLVVAKVWRLEFI
Length275
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.09
Grand average of hydropathy0.172
Instability index43.96
Isoelectric point9.24
Molecular weight30529.57
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
cytosolic small ribosomal subunit	GO:0022627	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central
rRNA binding	GO:0019843	IEA:UniProtKB-KW
structural constituent of ribosome	GO:0003735	IBA:GO_Central

GO - Biological Process
translation	GO:0006412	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09769
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.98|      11|      15|       5|      15|       1
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    5-   15 (23.72/10.93)	PCISPVTGPSP
   22-   32 (24.26/11.31)	PCLLPHRPTSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09769 with Med33 domain of Kingdom Viridiplantae
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