<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09768

Description ATP-dependent DNA helicase Q-like 4A
SequenceMLSLRSSACKIQGPERLQAPLIEKAWRSLCNTQAACKSYLRPGLSAKARDCDRGHARTYGEGSYNTNKMSTVPGNRILSMESTGQPSERVSLQNNSSHQTVGICSSMRSHQNNHVVQEDMRATNQYNFARTNAALHQSMAADNMCSYDKFDAMDDDILATIDVDQIVMEHYQATNAPRGSASHNMSTPPGNKCSVNGMDEANLPRELSELCNHQCKLAFCREAMTHLQEMKDELLAVANELLDDDGELNPQHSQELHKRRLHLKKLVQLLEDHMTRSAQDEERQISHSMASTTSTQQHLPPMTPGSTFTMDSNRFQSQVYVGNGPRDSDLCYSPAPYSCSDNLSTPLNSVWKSYTPKVIDINYTEGSGDRKWSSTNFPWTKELEAKNRNKFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALISSGLTLVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMKDLMSCRYKLLYVTPEKIAKSGALSRLLDNLNSQGHLSRIVIDEAHCVSQWGHDFRPDYKSLGVLKQNFPKTPVLALTATATARVKEDVVQALALENCIVFKQSFNRANLRYYLRPKTKKCVEDIDLFIRTNHSKECGIIYCLSRMDCEKVAEKLRDCGHKVSHYHGSMDPMDRTHIQKLWSKDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYQYSDYIRVRHMITQGVTEQTGAPRDLSSHEQALKTHKDNLLRMVSYCENDVDCRRLLQLIHFGEKFDPSLCARTCDNCLKESGWVEKDVTNIARQLVELVTRTGHSHSSTYILEVYRGSMSQNVKKQRHDALALHGAGRHLAKGEAARIMRHLVTEEILNEDVKKSDMYGSISSVLKVNHLKASGLLSGKHNIVLKFPASDKASKMRNLDASLLPQTNKNVQQQSEVDVKLASMLYEALLSLREQIMEECNEGFNAYHIFKTDTLKEMSIRVPRTKEELLDINGLGKTKVKKYGDRLLATIEDFLSKHPNPRRNSGGGGGGNEHSDAAKKRRGSTAISAASYGDYDFDERTGQQSKKRAAKTRTVSAHGPRCTDADLDGPEVVEVDGELRSVRKPVAYGNGRVLPKWAPL
Length1127
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.578
Instability index43.30
Isoelectric point8.56
Molecular weight126337.83
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09768
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     334.23|     110|     141|     618|     758|       1
---------------------------------------------------------------------------
  618-  751 (176.46/190.75)	IYCLSRMDCEKVAeKLRDCGHKvshYHGSM..DPMDRTHIQKLW.SKDKINIICATVAF....GMGinkpdvrfvihHSLPKSIEGYHQECGR..............AGRdgqpsscvlYYQYSDYIRV.RHMITQGVTEQTGAPRDL.SSHEQALK
  762-  894 (157.76/106.36)	SYCENDVDCRRLL.QLIHFGEK...FDPSLcaRTCDNCLKESGWvEKDVTNIARQLVELvtrtGHS...........HSSTYILEVYRGSMSQnvkkqrhdalalhgAGR.........HLAKGEAARImRHLVTEEILNEDVKKSDMyGSISSVLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.24|      29|      35|      94|     123|       3
---------------------------------------------------------------------------
   94-  123 (46.81/32.59)	NNSSHQTVGiCSSMRSHQNNHVVQEDMRAT
  132-  160 (48.42/29.27)	NAALHQSMA.ADNMCSYDKFDAMDDDILAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     215.52|      69|     753|     200|     276|       4
---------------------------------------------------------------------------
  200-  276 (104.86/87.68)	EA..NLPRELSELCNHQCKlAFCREAMTHLQEMKDELLAVANELLDDDGeLNPQHSQELHKRrlhlkkLVQLLEDHMTR
  954- 1024 (110.65/71.21)	EAllSLREQIMEECNEGFN.AYHIFKTDTLKEMSIRVPRTKEELLDING.LGKTKVKKYGDR......LLATIEDFLSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.30|      58|     549|       2|      60|       5
---------------------------------------------------------------------------
    2-   60 (98.74/73.51)	LSLRSSACKIQGPERLQAPLIEK..AWRSLCNtQAACKSYLRPGLSAKARDCD....RGHARTYG
  553-  616 (86.57/59.32)	LALTATATARVKEDVVQALALENciVFKQSFN.RANLRYYLRPKTKKCVEDIDlfirTNHSKECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.75|      15|     135|     384|     399|       8
---------------------------------------------------------------------------
  384-  399 (25.07/19.82)	EAKNRNKFGnHSFRPN
  522-  536 (32.68/20.93)	EAHCVSQWG.HDFRPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09768 with Med34 domain of Kingdom Viridiplantae
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