<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09766

Description ATP-dependent DNA helicase Q-like 4A
SequenceMQANKPPKVNWPHHENAVQGYSSRDDFLSSSFLFSLPTQRPNPEARERMLSLRSSACKIQGPERLQAPLIEKAWRSLCNTQAACKSYLRPGLSAKARDCDRGHARTYGEGSYNTNKMSTVPGNRILSMESTGQPSERVSLQNNSSHQTVGICSSMRSHQNNHVVQEDMRATNQYNFARTNAALHQSMAADNMCSYDKFDAMDDDILATIDVDQIVMEHYQATNAPRGSASHNMSTPPGNKCSVNGMDEANLPRELSELCNHQCKLAFCREAMTHLQEMKDELLAVANELLDDDGELNPQHSQELHKRRLHLKKLVQLLEDHMTRSAQDEERQISHSMASTTSTQQHLPPMTPGSTFTMDSNRFQSQVYVGNGPRDSDLCYSPAPYSCSDNLSTPLNSVWKSYTPKVIDINYTEGSGDRKWSSTNFPWTKELEAKNRNKFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALISSGLTLVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMKDLMSCRYKLLYVTPEKIAKSGALSRLLDNLNSQGHLSRIVIDEAHCVSQWGHDFRPDYKSLGVLKQNFPKTPVLALTATATARVKEDVVQALALENCIVFKQSFNRANLRYYLRPKTKKCVEDIDLFIRTNHSKECGIIYCLSRMDCEKVAEKLRIASYYLDIDWELYF
Length696
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.573
Instability index41.94
Isoelectric point7.09
Molecular weight78553.90
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
helicase activity	GO:0004386	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09766
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.54|      45|      74|     440|     484|       1
---------------------------------------------------------------------------
  440-  472 (49.83/31.33)	..........................................GNHSFRPNQRE..IINATMS.GHDVFVLMPTGGGKS
  473-  547 (53.60/34.27)	LTYQLPALISSGltlvvcplvsliqdqimhlsqanipatylsGNLDW.SEQQE..IMKDLMScRYKLLYVTPEKIAKS
  550-  610 (51.12/32.33)	LSRLLDNLNSQG..............hlsrivideahcvsqwG.HDFRPDYKSlgVLKQNFP.KTPVLALTATATAR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.08|      33|      74|     175|     207|       2
---------------------------------------------------------------------------
  175-  207 (58.77/30.50)	NFARTNAAL..HQSMAADNMC..SYDKFDAMDDDILA
  225-  248 (32.98/14.45)	..PRGSASH..NMSTPPGNKC..S...VNGMDE....
  250-  284 (43.33/20.89)	NLPRELSELcnHQCKLA..FCreAMTHLQEMKDELLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.57|      38|     550|      66|     108|       3
---------------------------------------------------------------------------
   66-  108 (62.76/48.93)	QAPLIEK..AWRSLCNtQAACKSYLRPglsaKARDC....D....RGHARTYG
  617-  664 (53.81/30.08)	QALALENciVFKQSFN.RANLRYYLRP....KTKKCvediDlfirTNHSKECG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09766 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EHYQATNAPRGSASHNMSTPPGNKCSVNGMD
2) STVPGNRILSMESTGQPSERVSLQNNSSHQTVGICSSMRSHQNNHVVQEDMRAT
3) VQLLEDHMTRSAQDEERQISHSMASTTSTQQHLPPMTPGSTFTMD
217
118
315
247
171
359










Molecular Recognition Features






MoRF SequenceStartStop




NANANA