<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09763

Description ATP-dependent DNA helicase Q-like 4A
SequenceMQANKPPKVNWPHHENAVQGYSSRDDFLSSSFLFSLPTQRPNPEARERMLSLRSSACKIQGPERLQAPLIEKAWRSLCNTQAACKSYLRPGLSAKARDCDRGHARTYGEGSYNTNKMSTVPGNRILSMESTGQPSERVSLQNNSSHQTVGICSSMRSHQNNHVVQEDMRATNQYNFARTNAALHQSMAADNMCSYDKFDAMDDDILATIDVDQIVMEHYQATNAPRGSASHNMSTPPGNKCSVNGMDEANLPRELSELCNHQCKLAFCREAMTHLQEMKDELLAVANELLDDDGELNPQHSQELHKRRLHLKKLVQLLEDHMTRSAQDEERQISHSMASTTSTQQHLPPMTPGSTFTMDSNRFQSQVYVGNGPRDSDLCYSPAPYSCSDNLSTPLNSVWKSYTPKVIDINYTEGSGDRKWSSTNFPWTKELEAKNRNKFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALISSGLTLVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMKDLMSCRYKLLYVTPEKIAKSGALSRLLDNLNSQGHLSRIVIDEAHCVSQWGHDFRPDYKSLGVLKQNFPKTPVLALTATATARVKEDVVQALALENCIVFKQSFNRANLRYYLRPKTKKCVEDIDLFIRTNHSKECGIIYCLSRMDCEKVAEKLRDCGHKVSHYHGSMDPMDRTHIQKLWSKDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYQYSDYIRVRHMITQGVTEQTGAPRDLSSHEQALKTHKDNLLRMVSYCENDVDCRRLLQLIHFGEKFDPSLCARTCDNCLKESGWVEKDVTNIARQLVELVTRTGHSHSSTYILEVYRGSMSQNVKKQRHDALALHGAGRHLAKGEAARIMRHLVTEEILNEDVKKSDMYGSISSVLKVNHLKASGLLSGKHNIVLKFPASDKASKMRNLDASLLPQTNKNVQQQSEVDVKLASMLYEALLSLREQIMEECNEGFNAYHIFKTDTLKEMSIRVPRTKEELLDINGLGKTKVKKYGDRLLATIEDFLSKHPNPRRNSGGGGGGNEHSDAAKKRRGSTAISAASYGDYDFDERTGQQSKKRAAKTRTVSAHGPRCTDADLDGPEVVEVDGELRSVRKPVAYGNGRVLPKWAPL
Length1175
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.602
Instability index42.92
Isoelectric point8.60
Molecular weight131887.89
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09763
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     334.23|     110|     141|     666|     806|       1
---------------------------------------------------------------------------
  666-  799 (176.46/195.20)	IYCLSRMDCEKVAeKLRDCGHKvshYHGSM..DPMDRTHIQKLW.SKDKINIICATVAF....GMGinkpdvrfvihHSLPKSIEGYHQECGR..............AGRdgqpsscvlYYQYSDYIRV.RHMITQGVTEQTGAPRDL.SSHEQALK
  810-  942 (157.76/108.85)	SYCENDVDCRRLL.QLIHFGEK...FDPSLcaRTCDNCLKESGWvEKDVTNIARQLVELvtrtGHS...........HSSTYILEVYRGSMSQnvkkqrhdalalhgAGR.........HLAKGEAARImRHLVTEEILNEDVKKSDMyGSISSVLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.54|      45|      74|     440|     484|       2
---------------------------------------------------------------------------
  440-  472 (49.83/26.84)	..........................................GNHSFRPNQRE..IINATMS.GHDVFVLMPTGGGKS
  473-  547 (53.60/29.41)	LTYQLPALISSGltlvvcplvsliqdqimhlsqanipatylsGNLDW.SEQQE..IMKDLMScRYKLLYVTPEKIAKS
  550-  610 (51.12/27.72)	LSRLLDNLNSQG..............hlsrivideahcvsqwG.HDFRPDYKSlgVLKQNFP.KTPVLALTATATAR.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.72|      33|      74|     175|     207|       3
---------------------------------------------------------------------------
  142-  170 (33.01/12.89)	.....NNSS..HQTVGiCSSMR..S..HQN..NHVVQEDMRA
  175-  207 (57.08/26.69)	NFARTNAAL..HQSMA.ADNMC..S..YDK..FDAMDDDILA
  218-  248 (27.06/ 9.48)	HYQATNAP....RGSA.SHNMS..TppGNKcsVNGMDE....
  250-  284 (37.57/15.50)	NLPRELSELcnHQCKL.A..FCreA..MTH..LQEMKDELLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.09|      42|     549|      66|     108|       4
---------------------------------------------------------------------------
   66-  108 (72.98/49.27)	QAPLIEK..AWRSLCNtQAACKSYLRPGLSAKARDCD....RGHARTYG
  617-  664 (64.11/38.56)	QALALENciVFKQSFN.RANLRYYLRPKTKKCVEDIDlfirTNHSKECG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09763 with Med34 domain of Kingdom Viridiplantae
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