<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09761

Description ATP-dependent DNA helicase
SequenceMLICATVIPCRLHLKKLVQLLEDHMTRSAQDEERQISHSMASTTSTQQHLPPMTPGSTFTMDSNRFQSQVYVGNGPRDSDLCYSPAPYSCSDNLSTPLNSVWKSYTPKVIDINYTEGSGDRKWSSTNFPWTKELEAKNRNKFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALISSGLTLVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMKDLMSCRYKLLYVTPEKIAKSGALSRLLDNLNSQGHLSRIVIDEAHCVSQWGHDFRPDYKSLGVLKQNFPKTPVLALTATATARVKEDVVQALALENCIVFKQSFNRANLRYYLRPKTKKCVEDIDLFIRTNHSKECGIIYCLSRMDCEKVAEKLRDCGHKVSHYHGSMDPMDRTHIQKLWSKDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYQYSDYIRVRHMITQGVTEQTGAPRDLSSHEQALKTHKDNLLRMVSYCENDVDCRRLLQLIHFGEKFDPSLCARTCDNCLKESGWVEKDVTNIARQLVELVTRTGHSHSSTYILEVYRGSMSQNVKKQRHDALALHGAGRHLAKGEAARIMRHLVTEEILNEDVKKSDMYGSISSVLKVNHLKASGLLSGKHNIVLKFPASDKASKMRNLDASLLPQTNKNVQQQSEVDVKLASMLYEALLSLREQIMEECNEGFNAYHIFKTDTLKEMSIRVPRTKEELLDINGLGKTKVKKYGDRLLATIEDFLSKHPNPRRNSGGGGGGNEHSDAAKKRRGSTAISAASYGDYDFDERTGQQSKKRAAKTRTVSAHGPRCTDADLDGPEVVEVDGELRSVRKPVAYGNGRVLPKWAPL
Length878
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.501
Instability index41.55
Isoelectric point8.94
Molecular weight98585.33
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09761
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     537.83|     140|     141|     369|     509|       1
---------------------------------------------------------------------------
  237-  366 (160.19/124.47)	.YKLLYVTPEKIAKSgalSRLLDNLNSQGHLSR..IVIDEAHCVSQW.GHD..................F.RPDYKSlgVLKQNFPKTpvLALTATATAR..............VKEDvVQAlalENCIVFKQSFNRANL.RYYL.RPKTKKCVEDIDL......FIRTNHSKEC
  369-  509 (241.29/197.44)	IYCLSRMDCEKVAEK...LRDCGHKVSHYHGSM..DPMDRTHIQKLW.SKDKINIICATVAF....GMGInKPDVRF..VIHHSLPKS..IEGYHQECGR..............AGRD.GQP...SSCVLYYQYSDYIRV.RHMITQGVTEQTGAPRDL.SSHEQALKTHKDNLL
  513-  645 (136.34/104.57)	SYCENDVDCRRLL.Q...LIHFGEK...FDPSLcaRTCDNCLKESGWvEKDVTNIARQLVELvtrtGHS.............HSSTYI..LEVYRGSMSQnvkkqrhdalalhgAGR.............HLAKGEAARImRHLVTEEILNEDVKKSDMyGSISSVLK.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.39|      49|      96|      73|     124|       2
---------------------------------------------------------------------------
   73-  124 (88.58/81.63)	GNGprdSDLCYS.PAPYSCSDNLST.PLNSVWKSYTPKV..IDINYTEGSGDRKWS
  171-  223 (72.82/56.77)	GGG...KSLTYQlPALISSGLTLVVcPLVSLIQDQIMHLsqANIPATYLSGNLDWS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09761 with Med34 domain of Kingdom Viridiplantae
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