<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09755

Description Pre-mRNA-processing protein 40C
SequenceMFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGEVFAQRNNFINLRRLQQNQFQFLGMSGLMDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKLHSNLILFIDNIEINKSESSGWFWHVELWIVNFDIHTTIQTPKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length657
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.965
Instability index44.18
Isoelectric point8.30
Molecular weight74894.82
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     230.33|      35|      66|     345|     379|       1
---------------------------------------------------------------------------
  345-  379 (57.59/39.89)	DINQKTDYQEFKRKWGAD....TRFEALDRKEREILFSE
  414-  448 (54.28/37.10)	DIHTTIQTPKVKENFRSD....PRYKAMKHEERETIFNE
  463-  493 (38.98/24.22)	AAKAKVDEQAKLKERERE....TR....KRKEREEQEME
  518-  554 (44.12/28.55)	D..PKASWTESKPKLEKDpqgrARNPDLGQGDAEKLFRD
  590-  616 (35.36/21.17)	AIN...SWSEAKGHLRSD....LRYNKLPSKDKE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.91|      36|      66|      22|      61|       2
---------------------------------------------------------------------------
   22-   61 (60.99/46.57)	GVQDSDA...WSAHKTETGVVYYYNALTGESTYQKPTgykgEV
   86-  124 (62.92/37.87)	GLMDKLAgtnWSIVTTSDGKKYYYDNKQKVSSWQLPP....EV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.08|      10|      16|     179|     188|       3
---------------------------------------------------------------------------
  179-  188 (18.98/10.43)	APASPSPLDL
  196-  205 (17.10/ 8.74)	AGASSAPSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.56|      16|      16|     292|     307|       5
---------------------------------------------------------------------------
  292-  307 (29.56/19.09)	FDP..RFKAIPSHSTRRA
  309-  326 (23.00/13.14)	FDHyvRTRAEEERKEKRA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09755 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVK
2) SSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCI
3) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
460
199
522
496
265
551










Molecular Recognition Features






MoRF SequenceStartStop




1) GKQPRSSDPPRRR
2) IWRRYA
3) KLRQSDTKEK
4) LIKKKL
645
618
629
188
657
623
638
193