<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09754

Description Pre-mRNA-processing protein 40C
SequenceMAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQAVCT
Length503
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.984
Instability index37.80
Isoelectric point6.49
Molecular weight56614.38
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09754
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     405.73|      96|     129|     231|     327|       1
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  188-  282 (117.14/73.80)	.........KPADAALKGQLVANNgEKLKDNNGDVNISD.SSSDSDDeehgpsKEDCIRQFKVMLKE.RGVAPFSKWEKELPKIVFDPRFKAIpSHSTRRAIFDHY
  283-  350 (108.43/63.46)	VRTRAEEERKEKRAALKAAVEAYK.ELLEEASEDINQKT.DYQEFKR............................KWG.......ADTRFEAL.DRKEREILFSEK
  351-  413 (86.26/48.91)	V..KAVQEK........................................vqsmRKAVIANFKSMLREsKDITSTSRWAKVKENFRSDPRYKAM.KHEERETIFNEY
  415-  499 (93.89/53.66)	VELKSAEQEAEQ.AA.KAKVDEQA.KLKERERETRKRKErEEQEMERvkmkirRKEAVSSYQALLVE.MIKDPKASWTESKPKLEKDPQ.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.59|      48|      49|      41|      89|       2
---------------------------------------------------------------------------
   41-   89 (82.20/49.24)	GHGGQVtEQLEDNRNTGVQDSDA...WSAHKTETGVVYYYNALTGESTYQKP
   91-  141 (80.38/44.27)	GYKGEL.EKVATEPVPVSWDKLAgtnWSIVTTSDGKKYYYDNKQKVSSWQLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09754 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) LKEGSTSLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCI
3) MAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAW
424
156
1
463
235
64










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYD
123
130