<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09753

Description Pre-mRNA-processing protein 40C
SequenceMATLASAVSDVGVEEPSPAKAADPKEPAAAVEEPAAAAAELAGASIPSPVAAADAGDASSGPALATTPPASPATSAAPPPVSPAPLVSPAPPAEPGPPRSQFAGSLSYIAPGTPSPSAAFSYNVLPRAPPAPQVGGAAASLQPCSSPALMVAPIPASALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPVTGANLAGPISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSNIPFGAIAQQGSSDINNLKSDSPRAPEVTPQAMQLSTGMPSKSPSTIASASGSPSIPIQTLTNSSVPPRPEVFGATRPSVPAQPSATVSNPTGFLGRPIVPPAAPLPQTPPPIATQGGTPQNSQRPFYPSYPSGPGIVPPQPLWPHPHPPQPTGFQQPPFQYYPAGPVGSLGRPITGASAATMAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length1006
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.625
Instability index56.99
Isoelectric point8.57
Molecular weight106729.82
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09753
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     471.28|      69|      69|     187|     255|       1
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   14-   86 (40.50/ 7.74)	..................EEPSPAKA..ADPKE..PAAA...VEEPaAA.AAELAgA..SI.PSPvaaadagdaSSGPALattppaspATS....AA.......P..PP.VSPAPL
   87-  149 (56.46/13.90)	VSP.....APPAEP....GP..........PRSQFAGSLsyiAPGT.PSpSAAFS.Y..NVlPR...............A........PPA....PQvggaaasL..QP.CSSPAL
  151-  200 (71.13/19.55)	VAPI.....PASAL....QPPAPGQYfgNRPSFSYNVVS...HANA......RLP..................................TG....QQ.......F..QP.VTGANL
  201-  268 (111.98/35.31)	AGPISR.FVPPGSL....QPPTPGHI..TRPSTAFPGSM...APNP.PG.SIQLP.F..SV.PRP.........SNIPFG...........aiaqQG.......S..SD.IN..NL
  271-  341 (79.40/22.74)	DSPRAP.EVTPQAM....QLSTGMPS..KSPSTIASASG...SPSI.PI.QTLTN.S..SVpPRP..........EV.FG........ATR....PS.......VpaQPsATVSNP
  342-  382 (43.44/ 8.87)	TGFLGRpIVPPAAP....LPQTP.......PPIATQGG......TP.QN.S.QRP.FypSY.P.....................................................
  383-  430 (68.38/18.49)	SGP..G.IVPPQPLwphpHPPQPTG...............................F..QQ.PPF.........QYYPAG........PVG....SL.......G..RP.ITGASA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     293.10|      60|      60|     856|     915|       2
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  714-  752 (39.06/19.48)	...................EDCIRQ........fkvmlKE......RGV....APFS.KWEK.....ELPKIVFD.PRFKA.IP
  753-  819 (49.64/26.82)	..SHSTRRAIFDHYVRTRAEEERKE.kraalkaaveayKElleeaSEDI....NQ......KTDYQEFKRKWGAD.TRFEA...
  820-  890 (79.27/47.40)	.LDRKEREILFSEKVKAVQEK.VQSmrkavianfksmlRE.....SKDI....TSTS.RWAKASWTESKPKLEKD.PQGRARNP
  891-  957 (69.52/40.63)	DLGQGDAEKLFRDHVKDLYERCVRD........frallSE...viTPEVaartTAEG.KTAINSWSEAKGHLRSD.....LRYN
  958- 1002 (55.61/30.96)	KLPSKDKESIWRRYADDL.......................................tRKLRQSDTKEKDKSDTDgKQPRSSDP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.86|      50|      51|     469|     519|       3
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  456-  509 (80.58/54.76)	NAGSEQSTHA..........aaePDSTGHGGQVtEQLEDN...RNTGVQDSDA...WSAHKTETGVVYYY
  510-  561 (71.73/43.92)	NALTGESTYQ............kP..TGYKGEL.EKVATE...PVPVSWDKLAgtnWSIVTTSDGKKYYY
  562-  619 (43.55/23.49)	DNKQKVSSWQlppevceilknaeSGSLKEGST...SLQDAatiENKGVISIDA....STPAIQTG.....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09753 with Med35 domain of Kingdom Viridiplantae
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