<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09752

Description Pre-mRNA-processing protein 40C
SequenceMLMLDCLLGANLAGPISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSNIPFGAIAQQGSSDINNLKSDSPRAPEVTPQAMQLSTGMPSKSPSTIASASGSPSIPIQTLTNSSVPPRPEVFGATRPSVPAQPSATVSNPTGFLGRPIVPPAAPLPQTPPPIATQGGTPQNSQRPFYPSYPSGPGIVPPQPLWPHPHPPQPTGFQQPPFQYYPAGPVGSLGRPITGASAATMAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length915
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.824
Instability index49.97
Isoelectric point9.02
Molecular weight100513.44
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09752
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     189.84|      25|      26|      21|      45|       1
---------------------------------------------------------------------------
   21-   45 (50.69/16.72)	PPGSLQPPTP.GHITRPST.AFP.GSMA
   48-   70 (30.67/ 7.74)	PPGSIQLPFS...VPRPSN..IPfGAIA
  163-  187 (37.61/10.85)	PPAAPLPQTP.PPIATQGG.TPQ.NSQR
  191-  211 (39.00/11.47)	PS...YPSGP.G.IVPPQP.LWP.HPHP
  220-  246 (31.87/ 8.28)	PPFQYYPAGPvGSLGRPITgASA.ATMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     365.60|      58|      60|     607|     664|       2
---------------------------------------------------------------------------
  557-  600 (31.75/16.75)	............................DPRFKA....IpSHSTRRAIFDHYVRTrAEEER.KEKRaalKAAVEAYK
  607-  664 (87.73/61.12)	SEDINQKT.........DYQEFKRKWGADTRFEA....L.DRKEREILFSEKVKA.VQEKV.QSMR...KAVIANFK
  670-  721 (69.15/46.39)	SKDITSTS.........RWAKVKENFRSDPRYKA....M.KHEERETIFNEYIVE.LKSAE.QEAE...QA......
  723-  767 (53.56/34.04)	....KAKV.........DEQAKLKERERETR.........KRKEREEQEMERVKM....KI.R..R...KEAVSSYQ
  774-  826 (69.09/46.34)	IKD..PKA.........SWTESKPKLEKDPQGRArnpdL.GQGDAEKLFRDHVKD.LYER...........CVRDFR
  834-  894 (54.33/34.64)	TPEVAARTtaegktainSWSEAKGHLRSDLRYNK....L.PSKDKESIWRRYADD.LTRKLrQSDT...K.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.50|      19|      26|     116|     134|       3
---------------------------------------------------------------------------
   74-   90 (24.09/10.46)	.SSDINNLKSDS.PR....APEV
  116-  134 (36.12/19.70)	PSIPIQTLTNSSVPP....RPEV
  140-  162 (28.28/13.68)	PSVPAQPSATVSNPTgflgRPIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     259.92|      49|      49|     285|     333|       4
---------------------------------------------------------------------------
  268-  314 (50.85/26.74)	.......NAGSEQSTHaaAE..P......dstGHGGQVT.E...QLEDN...R.NTGVQDSDA...WSAHKTE
  315-  366 (65.42/36.59)	TGVVYYYNALTGESTY..QK..P........tGYKGEL..E...KVATE...P.VPVSWDKLAgtnWSIVTTS
  367-  429 (53.14/28.29)	DGKKYYYDNKQKVSSW..QL..PpevceilknAESGSLK.EgstSLQDAatiE.NKGVISIDA....STPAIQ
  430-  477 (57.34/31.13)	TG...GRDSLPLRQTV..APasP.........SPLDLIK.K...KLQDA...G.ASSAPSALA...TSSATSE
  479-  516 (33.16/14.78)	NGSKPADAALKGQLVA..NN...................gE...KLKDN...NgDVNISDSSS...DS.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09752 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) NIPFGAIAQQGSSDINNLKSDSPRAPEVTPQAMQLSTGMPSKSPSTIASASGSPSIPIQTLTNSSVPPRPEVFGATRPSVPAQPSATVSNPTGFLGRPIVPPAAPLPQTPPPIATQGGTPQNSQRPFYPSYPSGPGIVPPQPLWPHPHPPQPTGFQQPPFQYYPAGPVGSLGRPITGASAATMAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAWS
3) SRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSV
4) SSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCI
5) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
718
63
17
463
780
757
309
58
529
809










Molecular Recognition Features






MoRF SequenceStartStop




1) DLIKKKLQ
2) SIWRRYA
451
875
458
881