<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09751

Description Pre-mRNA-processing protein 40C
SequenceMQVLLPYRQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length466
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.145
Instability index39.52
Isoelectric point9.28
Molecular weight53858.93
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09751
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     402.12|      97|     129|      76|     172|       1
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   76-  172 (156.60/83.94)	KEDCIRQFKVMLKE.RGVAPFSKWEKELPKIVFDPRFKA.IP..SHSTRRAIFDHY.VRTRAEEERKEKRAALKAAV..EAYKELLEEASEDINQKT.DYQEFKR
  207-  303 (127.52/67.07)	RKAVIANFKSMLREsKDITSTSRWAKVKENFRSDPRYKA.M...KHEERETIFNEYiVELKSAEQEAEQ.AA.KAKV..DEQAKLKERERETRKRKErEEQEMER
  310-  407 (117.99/61.54)	RKEAVSSYQALLVE.MIKDPKASWTESKPKLEKDPQGRArNPdlGQGDAEKLFRDH.VKDLYERCVRDFRALLSEVItpEVAARTTAEGKTAIN....SWSEAK.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.41|      15|      23|     410|     424|       3
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  410-  424 (25.81/14.87)	LRSDLRYNKLPSKDK
  435-  449 (24.61/13.86)	LTRKLRQSDTKEKDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09751 with Med35 domain of Kingdom Viridiplantae
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