<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09749

Description Pre-mRNA-processing protein 40C
SequenceMFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length636
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.020
Instability index42.07
Isoelectric point8.85
Molecular weight72093.78
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09749
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.32|      26|      49|      29|      54|       1
---------------------------------------------------------------------------
   29-   54 (49.25/35.00)	WSAHKTETGVVYYYNALTGESTYQKP
   81-  106 (50.07/35.71)	WSIVTTSDGKKYYYDNKQKVSSWQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.84|      16|      18|     276|     292|       2
---------------------------------------------------------------------------
  278-  294 (24.36/14.81)	DPRFKAIpSHSTRRAIF
  347-  362 (25.91/11.33)	DTRFEAL.DRKEREILF
  410-  425 (29.58/13.86)	DPRYKAM.KHEERETIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.08|      10|      16|     164|     173|       4
---------------------------------------------------------------------------
  164-  173 (18.98/ 8.66)	APASPSPLDL
  181-  190 (17.10/ 7.20)	AGASSAPSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      15|      16|     436|     450|       5
---------------------------------------------------------------------------
  436-  450 (23.11/14.63)	EQEAEQAAKAKVDEQ
  455-  469 (24.32/15.86)	ERERETRKRKEREEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.92|      26|     101|     203|     229|       6
---------------------------------------------------------------------------
  203-  229 (39.22/27.07)	KPADAALKGQLVANNgEKLKDNNGDVN
  307-  332 (40.70/23.29)	KEKRAALKAAVEAYK.ELLEEASEDIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.21|      47|      56|     487|     541|       7
---------------------------------------------------------------------------
  487-  532 (77.06/44.70)	.....YQALLVEMIKDPKA............SWTESKPKLEKD.PQGRARNPDLGQGDAEKLFR
  541-  599 (58.01/44.34)	RcvrdFRALLSEVITPEVAarttaegktainSWSEAKGHLRSD.....LRYNKLPSKDKESIWR
  600-  632 (37.14/13.41)	R....YAD...DLTRKLRQ............SDTKEKDKSDTDgKQPRSSDP............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.21|      10|      20|     377|     386|       8
---------------------------------------------------------------------------
  377-  386 (17.62/12.16)	RKA.VIANFKS
  399-  409 (15.59/ 9.87)	RWAkVKENFRS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09749 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) SSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCI
3) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
439
184
501
478
250
530










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) KQPRSSDPPRRR
3) LDLIKKKLQ
4) SIWRRYADDLTRKLRQSDTKEK
89
625
171
596
95
636
179
617