<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09746

Description Pre-mRNA-processing protein 40C
SequenceMATLASAVSDVGVEEPSPAKAADPKEPAAAVEEPAAAAAELAGASIPSPVAAADAGDASSGPALATTPPASPATSAAPPPVSPAPLVSPAPPAEPGPPRSQFAGSLSYIAPGTPSPSAAFSYNVLPRAPPAPQVGGAAASLQPCSSPALMVAPIPASALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPVTGANLAGPISRFVPPGSLQPPTPGHITRPSTAFPGSMAPNPPGSIQLPFSVPRPSNIPFGAIAQQGSSDINNLKSDSPRAPEVTPQAMQLSTGMPSKSPSTIASASGSPSIPIQTLTNSSVPPRPEVFGATRPSVPAQPSATVSNPTGFLGRPIVPPAAPLPQTPPPIATQGGTPQNSQRPFYPSYPSGPGIVPPQPLWPHPHPPQPTGFQQPPFQYYPAGPVGSLGRPITGASAATMAFANVQPPGVSTGGDRKVQASTNAGSEQSTHAAAEPDSTGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKVKAVQEKVQSMRKAVIANFKSMLRESKDITSTSRWAKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQVGQLN
Length922
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.540
Instability index56.57
Isoelectric point6.23
Molecular weight97103.19
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09746
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     596.75|      97|      97|     177|     273|       2
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   14-   95 (53.19/11.33)	.................E....EPSP...AKA..ADPK.E..PAAAVE.EPaAAAAELAgASIPSPV.......AAADAGDA......SSGPalattppaspatsaapppvspaPL.VS....................PAPPAEP
   96-  149 (81.91/21.37)	GPPRSQF..AGSL....S....YIAP...G.T..PSPS.AAFSYNVLP.RA.P..........PAP..................................................qVG....GAAASL........Q.PCSSPAL
  151-  200 (75.94/19.29)	VAPI....PASAL....Q....PPAP...GQYfgNRPS.FS........................................................................yNV.VS....HANARLP..TGQQFQ.PVTGANL
  201-  300 (160.60/48.91)	AGPISRFVPPGSL....Q....PPTP...GHI..TRPS.TAFPGSMAP.NP.PGSIQLP.FSVPRPSNIP..FGAIAQQGSSDINNLKSDSP...................rapEV.TP....QA.MQLS..TGMPSKsPSTIASA
  301-  382 (109.72/31.11)	SGSPS..IPIQTL....TnssvPPRPevfG.A..TRPSvPAQPSATVS.NP.TGFLGRP.I.VPPAAPLPqtPPPIATQGGTPQN...............................................SQRPFY.P...SYP
  383-  479 (115.39/33.09)	SGP..GIVPPQPLwphpH....PPQP...TGF..QQP.....PFQYYPaGP.VGSLGRP.ITGASAATMA..FANVQPPGVSTGGDRKVQAS.....................tNA.GSeqstHAAAE.PdsTGHGGQ..VT....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.61|      26|      49|     496|     521|       3
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  496-  521 (48.88/33.08)	WSAHKTETGVVYYYNALTGESTYQKP
  530-  545 (19.50/ 8.58)	KVA..TE.PVPVSWDKLAG.......
  548-  573 (47.22/31.69)	WSIVTTSDGKKYYYDNKQKVSSWQLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.88|      15|      16|     744|     759|       4
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  745-  761 (18.62/15.45)	DPRFKAIpSHSTRRAiF
  814-  829 (19.86/10.69)	DTRFEAL.DRKEREIlF
  877-  892 (23.41/13.97)	DPRYKAM.KHEERETiF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.36|      21|     129|     717|     737|       5
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  717-  737 (39.06/29.02)	IRQFKVMLKE.RGVAPFSKWEK
  848-  869 (33.30/23.60)	IANFKSMLREsKDITSTSRWAK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.55|      28|      61|     584|     611|       7
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  584-  611 (45.75/28.68)	ESGSLKEGS......................TSLQDA.............ATIENKGVISIDA
  612-  674 (25.80/12.89)	STPAIQTGGrdslplrqtvapaspspldlikKKLQDAgassapsalatssATSELNGSKPADA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09746 with Med35 domain of Kingdom Viridiplantae
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