<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09745

Description Pre-mRNA-processing protein 40C
SequenceMFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSENDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length592
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.044
Instability index42.37
Isoelectric point7.12
Molecular weight66983.81
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09745
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.32|      26|      49|      29|      54|       1
---------------------------------------------------------------------------
   29-   54 (49.25/31.36)	WSAHKTETGVVYYYNALTGESTYQKP
   81-  106 (50.07/32.00)	WSIVTTSDGKKYYYDNKQKVSSWQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     318.16|      85|      85|     258|     342|       2
---------------------------------------------------------------------------
  258-  335 (119.33/72.25)	.........................KERGVAPFSKWEKELPKIVFDPR..........................FKA.IP..S...HSTRRAIFDHY.VRTRAEEERKEKRAALKAAV..EAYKELLEEASEDINQKT
  336-  421 (68.53/38.22)	DYQEFKR.........................................kwgadtrfealdrkereilfsendprYKA.M...K...HEERETIFNEYiVELKSAEQEAEQ.AA.KAKV..DEQAKLKERERETRKRKE
  423-  527 (96.07/56.67)	EEQEMERvkmkirrkeavssyqallVEMIKDPKASWTESKPKLEKDPQ..........................GRArNPdlG...QGDAEKLFRDH.VKDLYERCVRDFRALLSEVItpEVAARTTAEGKTAIN...
  529-  573 (34.23/15.25)	...................................WSEAKGHLRSDLR..........................YNK.LP..SkdkESIWRRYADDL.TRKLRQSDTKEK............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.65|      37|      48|     128|     164|       3
---------------------------------------------------------------------------
  128-  164 (59.37/38.43)	LQDAATIENKGVISIDASTPAIQTGGRDSLPLR.QTVA
  178-  215 (52.28/33.00)	LQDAGASSAPSALATSSATSELNGSKPADAALKgQLVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09745 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKI
2) SSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCI
3) SWTESKPKLEKDPQGRARNPDLGQGDAEKL
395
184
457
434
250
486










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) KQPRSSDPPRRR
3) LDLIKKKLQ
4) SIWRRYADDLTRKLRQSDTKEK
89
581
171
552
95
592
179
573