<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09744

Description Pre-mRNA-processing protein 40C
SequenceMFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKLHSNLILFIDNIEINKSESSGWFWHVELWIVNFDIHTTIQTPKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR
Length642
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.976
Instability index44.06
Isoelectric point6.89
Molecular weight72977.59
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09744
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.32|      26|      49|      29|      54|       1
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   29-   54 (49.25/27.73)	WSAHKTETGVVYYYNALTGESTYQKP
   81-  106 (50.07/28.29)	WSIVTTSDGKKYYYDNKQKVSSWQLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     276.29|      67|     135|     273|     342|       2
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  273-  339 (112.18/57.43)	PKI..VF..DPRFKA.IP..SHSTRRAIFDHY.VRTRAEEERKEKRAAL................KAAVEAYKELLEEASEDINQKTDYQE
  407-  470 (71.29/32.97)	PKVkeNFrsDPRYKA.M...KHEERETIFNEYiVELKSAEQEAEQ.AA.................KAKVDEQAKLKERERETRKRK.....
  472-  510 (43.65/18.83)	..................................REEQEMERVKMKIRR................KEAVSSYQALLVEMIKD..PKASWTE
  513-  581 (49.18/19.75)	PKL..EK..DPQGRArNPdlGQGDAEKLFRDH.VKDLYERCVRDFRALLsevitpevaarttaegKTAINSWSE.................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.65|      37|      48|     128|     164|       3
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  128-  164 (59.37/40.91)	LQDAATIENKGVISIDASTPAIQTGGRDSLPLR.QTVA
  178-  215 (52.28/35.14)	LQDAGASSAPSALATSSATSELNGSKPADAALKgQLVA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.38|      45|     241|     341|     386|       4
---------------------------------------------------------------------------
  341-  386 (70.25/50.42)	KRKWGADTRFEALDRKEREIL...FSEKLHSNLILfIDNIEINKSESSG
  583-  630 (70.13/45.27)	KGHLRSDLRYNKLPSKDKESIwrrYADDLTRKLRQ.SDTKEKDKSDTDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09744 with Med35 domain of Kingdom Viridiplantae
Unable to open file!