Description | Pre-mRNA-processing protein 40C |
Sequence | MFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGELEKVATEPVPVSWDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQLPPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNNGDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWGADTRFEALDRKEREILFSEKLHSNLILFIDNIEINKSESSGWFWHVELWIVNFDIHTTIQTPKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGHLRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR |
Length | 642 |
Position | Unknown |
Organism | Zea mays (Maize) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.976 |
Instability index | 44.06 |
Isoelectric point | 6.89 |
Molecular weight | 72977.59 |
Publications | PubMed=19965430 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP09744 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 99.32| 26| 49| 29| 54| 1 --------------------------------------------------------------------------- 29- 54 (49.25/27.73) WSAHKTETGVVYYYNALTGESTYQKP 81- 106 (50.07/28.29) WSIVTTSDGKKYYYDNKQKVSSWQLP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 276.29| 67| 135| 273| 342| 2 --------------------------------------------------------------------------- 273- 339 (112.18/57.43) PKI..VF..DPRFKA.IP..SHSTRRAIFDHY.VRTRAEEERKEKRAAL................KAAVEAYKELLEEASEDINQKTDYQE 407- 470 (71.29/32.97) PKVkeNFrsDPRYKA.M...KHEERETIFNEYiVELKSAEQEAEQ.AA.................KAKVDEQAKLKERERETRKRK..... 472- 510 (43.65/18.83) ..................................REEQEMERVKMKIRR................KEAVSSYQALLVEMIKD..PKASWTE 513- 581 (49.18/19.75) PKL..EK..DPQGRArNPdlGQGDAEKLFRDH.VKDLYERCVRDFRALLsevitpevaarttaegKTAINSWSE................. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 111.65| 37| 48| 128| 164| 3 --------------------------------------------------------------------------- 128- 164 (59.37/40.91) LQDAATIENKGVISIDASTPAIQTGGRDSLPLR.QTVA 178- 215 (52.28/35.14) LQDAGASSAPSALATSSATSELNGSKPADAALKgQLVA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 140.38| 45| 241| 341| 386| 4 --------------------------------------------------------------------------- 341- 386 (70.25/50.42) KRKWGADTRFEALDRKEREIL...FSEKLHSNLILfIDNIEINKSESSG 583- 630 (70.13/45.27) KGHLRSDLRYNKLPSKDKESIwrrYADDLTRKLRQ.SDTKEKDKSDTDG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GKQPRSSDPPRRR 2) KLRQSDTKEK 3) LIKKKLQ 4) SIWRRYA | 630 614 173 602 | 642 623 179 608 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab