<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09741

Description Uncharacterized protein
SequenceMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHIGVMVGMGQKDAYVGDEVQSKRGILTLKYLSLHITLFPTLQQSVQQSEHLFRDSCNDMGSVNEVPAQPIYIDSFPKLRAWFCKPIMTKPKVALKPQTLSPQPEAQAPHDPQTPEQQQSGTGSIIYVNKKQRREAAHIAGDKDFTCLASSGLQDVVDDVHAIFPRFMLNNEGETNGDDAKSSNGEAARGGSNGGEKQGDESNGGGILSAVASRIGVVVSSANGDRSGSAEDGAKTSAGDAGHGSKGEEKGRGVNGGRIVEQIISNLPSDDQAPDADEASLLIAIIED
Length328
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.462
Instability index46.51
Isoelectric point4.95
Molecular weight34562.99
Publications
PubMed=19965430

Function

Annotated function Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. 
ECO:0000256	ARBA:ARBA00003589
GO - Cellular Component
cytoskeleton	GO:0005856	IEA:UniProtKB-SubCell
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09741
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.99|      41|      51|     213|     255|       1
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  213-  255 (67.54/39.26)	GETNG...DDAKSSNGEAARGGSngGEKQGDESNGGGILSAVASRI
  264-  307 (68.45/34.39)	GDRSGsaeDGAKTSAGDAGHGSK..GEEKGRGVNGGRIVEQIISNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09741 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALKPQTLSPQPEAQAPHDPQTPEQQQSGTGSIIYV
2) FPRFMLNNEGETNGDDAKSSNGEAARGGSNGGEKQGDESNGGGI
3) SSANGDRSGSAEDGAKTSAGDAGHGSKGEEKGRGVNGGRIVEQIISNLPSDDQAPDADEASLLIA
134
204
260
168
247
324










Molecular Recognition Features






MoRF SequenceStartStop




1) RGVNGGRIVEQIISNLPSDDQAPDADEASLLIAIIED
292
328