<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09738

Description Lycopene epsilon cyclase1
SequenceMQGGPLSPDEYWVISPPALLHQPASTIVVAIDRDRNSQLAVKWVVDHLLSGASHIVLLHVAVHYHTTHGFAMVETTQGALEAEMKEIFVPYRGFFNRNGVEVSEVVLEEADVSKAILGYITANKIQSIALGGANRNAFTKKFKNADVPSTLMKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHTGADIASDTDSLRESVLYMRRGSRGHLPRVTPDAWRSIDGRTPPELSTRPLFRERLLSSSATTKNFVVLPGKDNFETSSRSARHDSLGGDLDFGPSTALEPMSPATGAQRDTEAEMRRLRLELKQTMDMYNAACKEARNAEEAALAVAEMEKAKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFLQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDHGSLEDRLFRRGGTPPLAWAQRFRIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLTHHVEKAIDAGTFEQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAARANGGSGESGAQISGDSTTVGGSWETADS
Length711
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.318
Instability index41.42
Isoelectric point6.74
Molecular weight78581.59
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09738
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.01|       9|      26|      19|      28|       1
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   19-   28 (11.81/12.67)	LLhQPASTIV
   48-   56 (16.20/ 9.96)	LL.SGASHIV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.09|      20|     134|     463|     484|       2
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  154-  174 (33.89/19.50)	CaPDY.CNIYVVAKGKSVNVRL
  464-  484 (36.19/27.62)	C.PEYgCLVYEYMDHGSLEDRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.29|      20|      20|     315|     334|       4
---------------------------------------------------------------------------
  315-  334 (33.48/18.33)	AACKEARNAEEAALAVAEME
  336-  355 (33.81/18.58)	AKCRAAMEAAEAAQRLADLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.06|      26|      28|     207|     232|       7
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  207-  232 (47.92/32.05)	RGHL..PRVTPDAWRSIDGRTPPELSTR
  236-  263 (38.15/24.03)	RERLlsSSATTKNFVVLPGKDNFETSSR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09738 with Med32 domain of Kingdom Viridiplantae
Unable to open file!