<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09736

Description Lycopene epsilon cyclase1
SequenceMQGGPLSPDEYWVISPPALLHQPASTIVVAIDRDRNSQLAVKWVVDHLLSGASHIVLLHVAVHYHTTHGFAMVETTQGALEAEMKEIFVPYRGFFNRNGVNVEVSEVVLEEADVSKAILGYITANKIQSIALGGANRNAFTKKFKNADVPSTLMKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHTGADIASDTDSLRESVLYMRRGSRGHLPRVTPDAWRSIDGRTPPELSTRPLFRERLLSSSATTKNFVVLPGKDNFETSSRSARHDSMRRLRLELKQTMDMYNAACKEAINAKQRAKEMHMMKLEEARRLEEARNAEEAALAVAEMEKAKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFLQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDHGSLEDRLFRRGGTPPLAWAQRFRIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLTHHVEKAIDAGTFEQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAARANGGSGESGAQISGDSTTVGGSWETADS
Length708
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.335
Instability index42.42
Isoelectric point8.19
Molecular weight78774.12
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09736
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.34|      24|      28|     333|     357|       1
---------------------------------------------------------------------------
  288-  313 (28.53/11.07)	AACK...EAINAKQRakemhMMKLEEARR
  333-  356 (41.36/20.66)	AKCRAAMEAAEAAQR.....LADLEAQRR
  359-  376 (21.45/ 7.19)	AEVRARREADE...K.....VRALDA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.11|      14|      28|      12|      28|       2
---------------------------------------------------------------------------
   12-   28 (17.85/27.02)	WVISPpaLLhQPASTIV
   43-   56 (27.26/20.27)	WVVDH..LL.SGASHIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.06|      26|      28|     209|     234|       3
---------------------------------------------------------------------------
  209-  234 (47.92/33.21)	RGHL..PRVTPDAWRSIDGRTPPELSTR
  238-  265 (38.15/24.93)	RERLlsSSATTKNFVVLPGKDNFETSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.64|      19|      28|      73|      91|       4
---------------------------------------------------------------------------
   62-   88 (25.13/17.77)	VHY..htthgfamVETTQGAL.EAEMKEIF
   89-  118 (17.51/10.00)	VPYrgffnrngvnVEVSEVVLeEADVSKAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.28|      14|      22|     143|     158|       5
---------------------------------------------------------------------------
  143-  158 (21.92/20.67)	KFKNADVpsTLMKCA..P
  168-  183 (21.36/12.17)	KGKSVNV..RLAKCGvpP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09736 with Med32 domain of Kingdom Viridiplantae
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