<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09733

Description Lycopene epsilon cyclase1
SequenceMQGGPLSPDEYWVISPPALLHQPASTIVVAIDRDRNSQLAVKWVVDHLLSGASHIVLLHVAVHYHTTHGFAMVETTQGALEAEMKEIFVPYRGFFNRNGVEVSEVVLEEADVSKAILGYITANKIQSIALGGANRNAFTKKFKNADVPSTLMKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHTGADIASDTDSLRESVLYMRRGSRGHLPRVTPDAWRSIDGRTPPELSTRPLFRERLLSSSAQRDTEAEMRRLRLEEARNAEEAALAVAEMEKAKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFLQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDHGSLEDRLFRRGGTPPLAWAQRFRIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLTHHVEKAIDAGTFEQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAARANGGSGESGAQISGDSTTVGGSWETADS
Length651
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.301
Instability index40.05
Isoelectric point6.87
Molecular weight72220.54
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09733
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.11|      14|     139|      28|      64|       1
---------------------------------------------------------------------------
   12-   28 (17.85/26.50)	WVISPpaLLhQPASTIV
   43-   56 (27.26/23.92)	WVVDH..LL.SGASHIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.49|      20|      20|     262|     281|       3
---------------------------------------------------------------------------
  250-  270 (26.30/16.84)	AEMRRLRLEEA.....rNAEEA..AL.AV
  271-  291 (27.65/18.12)	AEMEKAKCRAA.....mEAAEA..AQ.RL
  292-  320 (15.54/ 6.52)	ADLEAQRRRNAevrarrEADEKvrALdAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.75|      20|     332|     177|     203|       6
---------------------------------------------------------------------------
  182-  203 (31.27/24.01)	MHTGA.DIASDTDSLreSVLYMR
  517-  537 (29.48/20.03)	QQTGKlGVKSDIYSL..GVLLLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.28|      14|      22|     141|     156|       7
---------------------------------------------------------------------------
  141-  156 (21.92/22.13)	KFKNADVpsTLMKCA..P
  166-  181 (21.36/13.01)	KGKSVNV..RLAKCGvpP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09733 with Med32 domain of Kingdom Viridiplantae
Unable to open file!