<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09726

Description Lycopene epsilon cyclase1
SequenceMQGGPLSPDEYWVISPPALLHQPASTIVVAIDRDRNSQLAVKWVVDHLLSGASHIVLLHVAVHYHTTHGFAMVETTQGALEAEMKEIFVPYRGFFNRNGVEVSEVVLEEADVSKAILGYITANKIQSIALGGANRNAFTKKFKNADVPSTLMKCAPDYCNIYVVAKGKSVNVRLAKCGVPPMHTGADIASDTDSLRESVLYMRRGSRGHLPRVTPDAWRSIDGRTPPELSTRPLFRERLLSSSATTKNFVVLPGKDNFETSSRSARHDSLGGDLDFGPSTRFSYIDLGENLDMSTTLPALEAINAKQRAKEMHMMKLEEARRLEEARNAEEAALAVAEMEKAKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRKYHIDEIEMATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAHQGRKQFLQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDHGSLEDRLFRRGGTPPLAWAQRFRIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVVTARPPMGLTHHVEKAIDAGTFEQMLDITVKDWPVEEALGYAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAARANGGSGESGAQISGDSTTVGGSWETADS
Length717
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.312
Instability index41.28
Isoelectric point6.64
Molecular weight79405.55
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09726
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.17|      12|      28|     221|     232|       1
---------------------------------------------------------------------------
  221-  232 (21.74/11.61)	IDGRTPPELSTR
  252-  263 (21.43/11.35)	LPGKDNFETSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.11|      14|     139|      28|      64|       2
---------------------------------------------------------------------------
   12-   28 (17.85/21.57)	WVISPpaLLhQPASTIV
   43-   56 (27.26/19.47)	WVVDH..LL.SGASHIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.82|      43|     221|     396|     440|       4
---------------------------------------------------------------------------
  396-  438 (73.63/56.37)	YHIDEIE.MATERFSDE.LKIGE.GGYGPVYRASLDHTPVAIKVLR
  447-  492 (64.19/40.90)	QFLQEVEvLSCIRHPNMvLLLGAcPEYGCLVYEYMDHGSLEDRLFR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.29|      20|      20|     328|     347|       5
---------------------------------------------------------------------------
  304-  326 (22.64/13.90)	NAKQRAkeMHMMKLEEArRLEEA
  328-  347 (31.15/22.29)	NAEEAA..LAVAEMEKA.KCRAA
  349-  368 (30.51/21.66)	EAAEAA..QRLADLEAQ.RRRNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.28|      14|      22|     141|     156|       7
---------------------------------------------------------------------------
  141-  156 (21.92/19.66)	KFKNADVpsTLMKCA..P
  166-  181 (21.36/11.51)	KGKSVNV..RLAKCGvpP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09726 with Med32 domain of Kingdom Viridiplantae
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