<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09721

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMADGLDRWRGFFRGAGAGICDVIENAILVAAADAPRDFLHRRATPVEEDKGSVRRVAEKECKVDSSSNGTHGGGGHGHGHADEDDDSDSDDERLRRAAASNYGHNYDDDDEDGDQQEEDEQQHAADDTEEGEEDHDAEELEALTNEIDEESQIVGEVLRIKELLLHKEDHSDATLFDSLRRLQLMQLSVSTLKATEIGRAVNRLRKHNSREIRHLVCTLIEGWKVLVDEWVSTTNAALTENSPGSSNPSVVDEEEEGLPSPPLDEGAFFATQTTSIQLSEFFDEMDEDGNLRHSNDPSLGNKRGNNGGRLASHSTVARQDPPRSYPGVVERVQPRRLELARQEPPMRQANPQTLQSSSLQAKPHGALNKQSNNPSSYESGPGRPVKAAQQRPFGDMKPKQTREHVAIERKPMASQTDKSRPGARPSAGAKLELAKPKVYDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKNQNRQPVVKSRNSLRNWANGRR
Length506
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-1.068
Instability index60.82
Isoelectric point5.33
Molecular weight56342.00
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09721
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.11|      19|      20|     303|     322|       1
---------------------------------------------------------------------------
  286-  304 (30.05/14.62)	DEDGNL.RHSNDPSLGNKRG
  305-  324 (30.06/18.63)	NNGGRLaSHSTVARQDPPRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.96|      39|      82|     378|     420|       2
---------------------------------------------------------------------------
  334-  373 (60.12/23.63)	PRRLELARQEPPMRQANP.QTLQSSSLQAKPHGALNKQSnN
  381-  420 (63.84/34.30)	PGRPVKAAQQRPFGDMKPkQTREHVAIERKPMASQTDKS.R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.56|      17|      19|     108|     124|       3
---------------------------------------------------------------------------
   82-   98 (26.48/10.95)	DEDDDSDSDDERLRRAA
  108-  124 (30.42/13.56)	DDDEDGDQQEEDEQQHA
  126-  142 (26.66/11.07)	DDTEEGEEDHDAEELEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.57|      10|      23|     464|     473|       5
---------------------------------------------------------------------------
  464-  473 (16.41/ 8.73)	ENAKRQRTIQ
  484-  493 (17.16/ 9.41)	KNQNRQPVVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09721 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DAPRDFLHRRATPVEEDKGSVRRVAEKECKVDSSSNGTHGGGGHGHGHADEDDDSDSDDERLRRAAASNYGHNYDDDDEDGDQQEEDEQQHAADDTEEGEEDHDAEELEALTNEID
2) SEFFDEMDEDGNLRHSNDPSLGNKRGNNGGRLASHSTVARQDPPRSYPGVVERVQPRRLELARQEPPMRQANPQTLQSSSLQAKPHGALNKQSNNPSSYESGPGRPVKAAQQRPFGDMKPKQTREHVAIERKPMASQTDKSRPGARPSAGAKLELAKPKVYDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKNQNRQPVVKSRNSLRNWANGRR
3) TNAALTENSPGSSNPSVVDEEEEGLPSPPLDEGAFFA
33
279
234
148
506
270










Molecular Recognition Features






MoRF SequenceStartStop




1) AKLELAKPKVYDD
2) ERLRRAAASNYGH
3) REHVAIERK
429
92
402
441
104
410