<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09718

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMMQQAQAHTSALAGAPSASAVAPTVAHPHDPVGGDAPPKQVAQAMERLGRAGRFIADIRLGADRLLEALFVSGDAPPYSVRQHVDRMERIIVKEDAAMRLHFQDLRALGRLPIQHARIQFTDGLQTSSFILQSPARANPVFFIGMSSSSGEFGRRHQDNVEVIFPESQVVGSGRQLEESGVLNGALKAQGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEVVSHLHDGQPGDTKKSKLFTSNGYLEEKSLSEILKNLEHEVPNIKIFTYWHLDWSKRASSLASLLDDDFVDPSKELNLQNMDKSRSDALTTTIDQVAVIELLVPSIFRAVVSLHPAGSTDPDAVAFFSPTEGGSYLHARGTSVHHVFKHVKEHADKALQYFINAEPSKALPLLLRWIASYQTLFTKVCSKCRRLLMMDKSLALLLPPVHRPYHQTSNVGPDLQEAYHIGCSSYDG
Length483
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.249
Instability index43.56
Isoelectric point7.10
Molecular weight53210.86
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09718
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.58|      18|      19|      58|      75|       1
---------------------------------------------------------------------------
   32-   70 (18.77/ 8.42)	VGGDAppkqvaqamerlgragrfiadIRLGADRLLEALF
   71-   91 (24.04/12.58)	VSGDA.................ppysVRQHVDR.MERII
   92-  108 (18.77/ 8.42)	VKEDA....................aMRLHFQDL.RAL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.18|      16|      19|     112|     128|       2
---------------------------------------------------------------------------
  112-  128 (24.25/21.62)	PIQHARIQFTdGLQTSS
  134-  149 (28.93/20.01)	PARANPVFFI.GMSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.23|      25|      25|     244|     268|       3
---------------------------------------------------------------------------
  244-  268 (42.11/32.10)	HLEDEVVSHLHDGQPGDTKKSKLFT
  272-  296 (39.11/29.26)	YLEEKSLSEILKNLEHEVPNIKIFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.53|      20|     201|       5|      24|       4
---------------------------------------------------------------------------
    5-   24 (34.85/18.98)	AQAHTSALAGAPSASAVAPT
  208-  227 (36.68/20.30)	AYAWKRQLAGQAGASAVDRT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09718 with Med27 domain of Kingdom Viridiplantae
Unable to open file!