<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09711

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMFDLVDSSQLDTTTVLRLSPLSLIPIDQDSSGTLSVQIPQKSLRSLSLKFHGDIVNNAESSAIKKKEGTLTNTTAEAEKDVLADDDVNKSIRYAHSILRDIHKSIFEEQVFDMVIRETFNQSQGINVTGMCEDFLQLAIGQECSLCLSLELSGQNNNAGTVGQQDHMDTNYPGNLAVATVNGKESSNKDVRGFPNPKSLEIYLLHMFHEILRKLREKSRHVVRYQSSAQAAPDDCGLLSHFCMTVAHRIFSNKVHLELESVVSRVPYLHLRSLPTWHSRTSSWSLCLKVPQPILATGRVTKPSDYHELKYKSRSQFSTKVILKDGQISLMGEGSPSIVGSLTGKPSDSRLINSYNCDLEDLPMMLLQQVASQVIHWLHDEAMILGMNVTRDFLCLYFDLGQGETLGLLAHVDPDDTYGCISWYLTVEHPMEEGKMSAGSPESEKRRFLGYLSLEVLYSTLMDLIKLCSTSDQIRAS
Length476
PositionHead
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.241
Instability index42.36
Isoelectric point5.72
Molecular weight53146.89
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09711
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.36|      56|      98|      34|      92|       1
---------------------------------------------------------------------------
   34-   92 (81.02/76.17)	LSVQIPQKSLRSLSLKFHGDiVNNAesSAIKKKEGTLTNTTAE.AEKDVLADDDVNKSIR
  135-  191 (92.34/73.72)	LQLAIGQECSLCLSLELSGQ.NNNA..GTVGQQDHMDTNYPGNlAVATVNGKESSNKDVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.42|      45|     180|     228|     273|       2
---------------------------------------------------------------------------
  228-  273 (75.73/57.88)	AQAAPDDC.GLLSHFcMTVAHRIFSNKVHL.ELESVVSR.VPYLHLRSL
  409-  456 (69.69/47.23)	AHVDPDDTyGCISWY.LTVEHPMEEGKMSAgSPESEKRRfLGYLSLEVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09711 with Med17 domain of Kingdom Viridiplantae
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