<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09708

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDVIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length709
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.09
Grand average of hydropathy0.199
Instability index52.08
Isoelectric point8.22
Molecular weight77001.29
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09708
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.41|      61|     209|     321|     414|       2
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  332-  397 (101.05/111.90)	EILASAGVQI...NSCYPRGvppmLPLPMA.ALVSLTiTFKLDRSLEYIQGVI.GHALE...NCAGGSSWPSMP
  450-  518 (92.35/42.46)	DIIANRGVGAllgDSITDQG....LRLPMApGFVYLR.TCRTFHDTYFVSEVIlKQVIEwahKLANGWSFNGPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     203.57|      65|      71|     104|     174|       3
---------------------------------------------------------------------------
  104-  174 (105.25/77.39)	FyrpPQEYC....LTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVN..EVSAQPiyiDSF..PKLSAW
  176-  248 (98.32/57.48)	F...QNQACiastLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSgsSVSASD...DSYqrPAVPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     258.99|      79|     506|      15|     102|       4
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   15-  102 (121.67/91.64)	STSTPGSMSHYLAH.MSTLNEILLGVSYGDVIhILSLYgmvPDVAVALMpLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLcllrLW
  522-  601 (137.32/77.40)	SGRTPLSCAASMAHqVAMLGGGLLCIAGGPLV.VQVLY...EDTLPTLL.LSAREQSLKDPGPVSSTLQGYAMANMLFYCGSL....LW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.82|      23|     213|     409|     434|       5
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  409-  434 (36.34/31.72)	RWH.DF........IVLSCmrSPfGRDKDAVAQLI
  623-  654 (36.48/20.23)	RNHmDFiagvldghILLGC..DP.GTWKAYVSQFM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.52|      46|     410|     250|     297|       6
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  250-  297 (73.04/52.89)	FL..EAVPFVLEAV....LTACAHGRLS..SRDLTTSLrdLVDFLPASLAAIVSYF
  655-  708 (64.48/40.18)	FLvvKFVPSWLPDIkldtLKKIAAGLRSwhEHDLALSL..LERGGPQAISVVVETF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09708 with Med33 domain of Kingdom Viridiplantae
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