<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09701

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMEAVKASEARRDPPLLRAVELSRVVAEEGAGAELAGILVSNLCFAHNSPSLWKLLGQAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHATSSLLAMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVILFVLAVVNKLIDSILEDCGFPSAMAEGQESVYAIEGPQPMDLDIKRGSTENQNEHREQLRRKNTFMALDVLHMMAADRKIQSFLSLIFLNMPEKFSSLRQRLSSIEAHKVTLETLLPSGHKINDLLINIWRVCKAGYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGKHLSVTSAIGIIKEMTKTMQVLNEASWQETFKALWISTLRLVQRAREPLEGPIPHLDARLCMLLALIPLSIAAILQEESDMFGVEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGAGNTSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWHGYVVPSRTLKDTALPQESPWLNFMKGSQLSEPLIDALVATPASSVAELDKLYSVATNGSEEEKTAAAKILCGASLVRGWNIQEHVVSMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDVIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1299
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.141
Instability index49.89
Isoelectric point7.89
Molecular weight141294.17
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09701
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.05|      65|      71|     694|     764|       1
---------------------------------------------------------------------------
  694-  764 (105.22/77.61)	FyrpPQEYC....LTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVN..EVSAQPiyiDSF..PKLSAW
  766-  838 (98.83/57.91)	F...QNQACiastLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSgsSVSASD...DSYqrPAVPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.34|      36|     333|     536|     578|       2
---------------------------------------------------------------------------
  536-  578 (52.95/43.60)	LIDALVATPASSV....AELDK.LYS.VATNGSEEEKTaaakilcGASL
  872-  913 (52.39/29.71)	LVDFLPASLAAIVsyfsAEITRgIWKpVPMNGTEWPSP.......GASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     273.19|      83|     502|     584|     692|       3
---------------------------------------------------------------------------
  601-  692 (128.82/108.29)	PSDSSTSTPGSMSHYLAH.MSTLNEILLGVSYGDVIhILSLYgmvPDVAVALMpLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLcllrLW
 1108- 1191 (144.37/71.42)	PQLKSGRTPLSCAASMAHqVAMLGGGLLCIAGGPLV.VQVLY...EDTLPTLL.LSAREQSLKDPGPVSSTLQGYAMANMLFYCGSL....LW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.95|      46|     631|     390|     436|       5
---------------------------------------------------------------------------
  227-  269 (45.45/28.89)	LIflnmPEKFSSLRQRLS...SIEAHKV.....TLETLLpsGHKIND..LLIN
  270-  291 (21.60/ 8.79)	IW....RVCKAGYQPNNKHILGVLGN...........................
  390-  436 (70.11/54.48)	LI....PLSIAAILQEESDMFGVEGNKILPQRqGLISSL..QDLIQYSGLLVP
 1023- 1063 (67.79/47.41)	LI....RSCFSSFLQSSS.....SGSDIIANR.GVGALL..GDSITDQGLRLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.22|      61|    1182|       9|      79|       7
---------------------------------------------------------------------------
    9-   79 (83.65/80.73)	ARRDPPLLRAVELSR...VVaeEGAGAELAGILVSNLCFAHNsPSLWKllgqAVASRLlcpLHVLALLTPRVLP
 1193- 1256 (106.57/68.97)	ADRSSPVMKLSFLSRrprVV..RNHMDFIAGVLDGHILLGCD.PGTWK....AYVSQF...MFLVVKFVPSWLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09701 with Med33 domain of Kingdom Viridiplantae
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