<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09699

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMEAVKASEARRDPPLLRAVELSRVVAEEGAGAELAGILVSNLCFAHNSPSLWKLLGQAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHATSSLLAMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVILFVLAVVNKLIDSILEDCGFPSAMAEGQESVYAIEGPQPMDLDIKRGSTENQNEHREQLRRKNTFMALDVLHMMAADRKIQSFLSLIFLNMPEKFSSLRQRLSSIEAHKVTLETLLPSGHKINDLLINIWRVCKAGYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGKHLSVTSAIGIIKEMTKTMQVLNEASWQETFKALWISTLRLVQRAREPLEGPIPHLDARLCMLLALIPLSIAAILQEESDMFGVEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGAGNTSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWHGYVVPSRTLKDTALPQESPWLNFMKGSQLSEPLIDALVATPASSVAELDKLYSVATNGSEEEKTAAAKILCGASLVRGWNIQVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1241
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.124
Instability index49.29
Isoelectric point8.24
Molecular weight135135.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09699
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     270.43|      84|     340|     621|     797|       1
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  706-  797 (126.50/236.15)	WYFQNQACIASTLSGL.CNKNPVHQVANKILNMICrkMNKGGVSSSNLSSTSSSSVsgsSVSASDDSYQRPAvPAWEFLEAvpFVLEAVLTAC
 1044- 1128 (143.94/71.79)	WSFNGPPQLKSGRTPLsCAASMAHQVAMLGGGLLC..IAGGPLVVQVLYEDTLPTL...LLSAREQSLKDPG.PVSSTLQG..YAMANMLFYC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.71|      22|      76|     830|     851|       5
---------------------------------------------------------------------------
  830-  851 (45.08/27.27)	SAEITRGIWKPVPMN...GTEWPS.P
  904-  929 (32.63/17.72)	SLEYIQGVIGHALENcagGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.95|      46|     581|     390|     436|       9
---------------------------------------------------------------------------
  227-  269 (45.45/27.95)	LIflnmPEKFSSLRQRLS...SIEAHKV.....TLETLLpsGHKIND..LLIN
  270-  291 (21.60/ 8.59)	IW....RVCKAGYQPNNKHILGVLGN...........................
  390-  436 (70.11/52.59)	LI....PLSIAAILQEESDMFGVEGNKILPQRqGLISSL..QDLIQYSGLLVP
  965- 1005 (67.79/45.78)	LI....RSCFSSFLQSSS.....SGSDIIANR.GVGALL..GDSITDQGLRLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.13|      42|    1124|       9|      53|      11
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    9-   53 (64.31/44.47)	ARRDPPLLRAVELSR...VVaeEGAGAELAGILVSNLCFAHNsPSLWK
 1135- 1179 (71.82/40.24)	ADRSSPVMKLSFLSRrprVV..RNHMDFIAGVLDGHILLGCD.PGTWK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09699 with Med33 domain of Kingdom Viridiplantae
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