<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09695

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMRRGWSPLLRAVELSRVVAEEGAGAELAGILVSNLCFAHNSPSLWKLLGQAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHATSSLLAMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVILFVLAVVNKLIDSILEDCGFPSAMAEGQESVYAIEGPQPMDLDIKRGSTENQNEHREQLRRKNTFMALDVLHMMAADRKIQSFLSLIFLNMPEKFSSLRQRLSSIEAHKVTLETLLPSGHKINDLLINIWRVCKAGYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGKHLSVTSAIGIIKEMTKTMQVLNEASWQETFKALWISTLRLVQRAREPLEGPIPHLDARLCMLLALIPLSIAAILQEESDMFGVEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGAGNTSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWHGYVVPSRTLKDTALPQESPWLNFMKGSQLSEPLIDALVATPASSVAELDKLYSVATNGSEEEKTAAAKILCGASLVRGWNIQEHVVSMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDVIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1292
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.146
Instability index50.14
Isoelectric point8.14
Molecular weight140626.47
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09695
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     262.75|      91|     567|     498|     640|       1
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  498-  604 (128.76/134.91)	YVV...PSRTLKDTALPQESPWlNFMkGS..QLS.EPL.IDALvatPASSVAELDKLYSVATNGSEeektaaakiLCGASLVRgwNIQEHVVSMVVKLL......SASLPSDSSTSTPGS
  711-  814 (133.99/62.64)	YLLlmhNNRIFSNSSAPNRDSY.NSM.GSvnEVSaQPIyIDSF...PKLSAWYFQNQACIASTLSG.........LCNKNPVH..QVANKILNMICRKMnkggvsSSNLSSTSSSSVSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.21|      41|     567|     368|     429|       5
---------------------------------------------------------------------------
  383-  429 (58.57/66.01)	LIPLSIAAILQEESdmfgvEGNKILPQRqGLISSLQDLIQYSGLLVP
 1016- 1056 (70.63/32.69)	LIRSCFSSFLQSSS.....SGSDIIANR.GVGALLGDSITDQGLRLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.71|      22|      76|     881|     902|       6
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  881-  902 (45.08/24.76)	SAEITRGIWKPVPMN...GTEWPS.P
  955-  980 (32.63/16.01)	SLEYIQGVIGHALENcagGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.73|      47|     502|     653|     703|       8
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  653-  703 (82.54/66.93)	SIAPPPNHKSTILGETSVYLVFSCAFLcllrLWKFYR..PPQEYCLTGRGGSV
 1156- 1204 (81.20/55.12)	SLKDPGPVSSTLQGYAMANMLFYCGSL....LWGADRssPVMKLSFLSRRPRV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09695 with Med33 domain of Kingdom Viridiplantae
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