<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09694

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGKHLSVTSAIGIIKEMTKTMQVLNEASWQETFKALWISTLRLVQRAREPLEGPIPHLDARLCMLLALIPLSIAAILQEESDMFGVEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGAGNTSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWHGYVVPSRTLKDTALPQESPWLNFMKGSQLSEPLIDALVATPASSVAELDKLYSVATNGSEEEKTAAAKILCGASLVRGWNIQEHVVSMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDVIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1008
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy0.181
Instability index49.14
Isoelectric point7.27
Molecular weight109105.04
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09694
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     541.57|     179|     208|     517|     713|       1
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  517-  713 (265.05/196.96)	SNLSSTSSSSVSGSSVSASddsyqRpAVPAwefLEAVPFVLEAVLTACAHGRLSSRDLTTsLRDLVdFLPASLAAIVSYFSAEITRGiWK...PVPMNGTEWP.SPGASL.HSIEAEVKEILASAG..VQINSCYPRGVPPMLpLPmAALVSLTITFKLDRSLeyiQG.VIGHALENCaGGSSWP...SMPIIG.ALWTQKVR..RWH.DFI
  735-  928 (276.52/153.44)	SCFSSFLQSSSSGSDIIAN.....R.GVGA...LLGDSITDQGLRLPMAPGFVYLRTCRT.FHDTY.FVSEVILKQVIEWAHKLANG.WSfngPPQLKSGRTPlSCAASMaHQVAMLGGGLLCIAGgpLVVQVLYEDTLPTLL.LS.AREQSLKDPGPVSSTL...QGyAMANMLFYC.GSLLWGadrSSPVMKlSFLSRRPRvvRNHmDFI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.77|      51|      71|     360|     414|       2
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  360-  414 (86.06/66.94)	LMPLCEAFGSIAPPPNHKSTILG...ETSVYLVFSCAFlCLLRLWKFyrpPQEYC....LTG
  430-  487 (82.71/51.47)	LMHNNRIFSNSSAPNRDSYNSMGsvnEVSAQPIYIDSF.PKLSAWYF...QNQACiastLSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09694 with Med33 domain of Kingdom Viridiplantae
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