<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09693

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMEAVKASEARRDPPLLRAVELSRVVAEEGAGAELAGILVSNLCFAHNSPSLWKLLGQAVASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHATSSLLAMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVILFVLAVVNKLIDSILEDCGFPSAMAEGQESVYAIEGPQPMDLDIKRGSTENQNEHREQLRRKNTFMALDVLHMMAADRKIQSFLSLIFLNMYIFSYPFSRWSSMYYPPMDKFNFNWLQLRVRPEKFSSLRQRLSSIEAHKVTLETLLPSGHKINDLLINIWRVCKAGYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGKHLSVTSAIGIIKEMTKTMQVLNEASWQETFKALWISTLRLVQRAREPLEGPIPHLDARLCMLLALIPLSIAAILQEESDMFGVEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYKAGAGNTSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWHGYVVPSRTLKDTALPQESPWLNFMKGSQLSEPLIDALVATPASSVAELDKLYSVATNGSEEEKTAAAKILCGASLVRGWNIQEHVVSMVVKLLSASLPSDSSTSTPGSMSHYLAHMSTLNEILLGVSYGDVIHILSLYGMVPDVAVALMPLCEAFGSIAPPPNHKSTILGETSVYLVFSCAFLCLLRLWKFYRPPQEYCLTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVNEVSAQPIYIDSFPKLSAWYFQNQACIASTLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSGSSVSASDDSYQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGTEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGHALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIRSCFSSFLQSSSSGSDIIANRGVGALLGDSITDQGLRLPMAPGFVYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWSFNGPPQLKSGRTPLSCAASMAHQVAMLGGGLLCIAGGPLVVQVLYEDTLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFYCGSLLWGADRSSPVMKLSFLSRRPRVVRNHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLPDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1330
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy0.126
Instability index50.59
Isoelectric point8.23
Molecular weight145316.78
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09693
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.71|      22|      76|     919|     940|       1
---------------------------------------------------------------------------
  919-  940 (45.08/25.79)	SAEITRGIWKPVPMN...GTEWPS.P
  993- 1018 (32.63/16.64)	SLEYIQGVIGHALENcagGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     204.05|      65|      71|     725|     795|       4
---------------------------------------------------------------------------
  725-  795 (105.22/86.02)	FyrpPQEYC....LTGRGGSVKLELTLDYLLLMHNNRIFSNSSAPNRDSYNSMGSVN..EVSAQPiyiDSF..PKLSAW
  797-  869 (98.83/64.24)	F...QNQACiastLSGLCNKNPVHQVANKILNMICRKMNKGGVSSSNLSSTSSSSVSgsSVSASD...DSYqrPAVPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.89|      20|     208|     942|     974|       5
---------------------------------------------------------------------------
  274-  295 (30.47/ 8.01)	LSSIEAHkvTLETLLPSGHKIN
  944-  963 (33.42/30.57)	LHSIEAE..VKEILASAGVQIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.22|      61|    1213|       9|      79|       7
---------------------------------------------------------------------------
    9-   79 (83.65/73.19)	ARRDPPLLRAVELSR...VVaeEGAGAELAGILVSNLCFAHNsPSLWKllgqAVASRLlcpLHVLALLTPRVLP
 1224- 1287 (106.57/62.51)	ADRSSPVMKLSFLSRrprVV..RNHMDFIAGVLDGHILLGCD.PGTWK....AYVSQF...MFLVVKFVPSWLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09693 with Med33 domain of Kingdom Viridiplantae
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