<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09685

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length655
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.02
Grand average of hydropathy-0.667
Instability index61.35
Isoelectric point9.69
Molecular weight71597.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09685
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.58|      15|      15|     572|     586|       1
---------------------------------------------------------------------------
  565-  582 (34.59/ 6.55)	QQQQqqqMQPQQQQMQQM
  583-  599 (34.99/ 6.72)	QQQQ.qqMQPQQQQMQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     397.94|      78|      78|     452|     529|       2
---------------------------------------------------------------------------
  311-  398 (81.98/12.69)	.......QQHANAQqppPKYVKIWEGTL.SG...................................QRQgQPviicklegyrsgtASETLAADWPETM......QIVRLIAQEHMNNKQYVGKADFLVF..RTLNHHGF
  401-  460 (89.96/14.77)	QLQEKKLCAVIQLP...SQTLLL......SM...................................ADK.AG.............RLIGM..LFPG..........DMVVFKPQAST.......QQTPM..QQQQLQQF
  461-  540 (149.06/30.15)	QQQQQQLQQHMHMQ...PQGLPLQQSQM.QL...................................QQQ.QP.............QMQPMQQQQPSQM......QQQMQSMQQQMQPMQQQMQHQQQQMqhQQQQMQQM
  542-  643 (76.93/11.37)	QQQQQQQQQQQQIQ...PQ....QQ.QMqQMqqqqqqqmqpqqqqmqqmqqqqqqmqpqqqqmqqmQQQ.QQ.............QMQPQQQQQP.QMvgtgmgQQFMQGHNRAVQMMQGKITPQ..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     199.07|      39|      39|     172|     210|       3
---------------------------------------------------------------------------
   50-  109 (33.93/10.24)	QPIvggisTTSVKVEPTTMppivsaPAF....ShvtpisNV..........ASQGIsalqTSSPSLISQEANMG
  117-  161 (36.00/11.34)	KPI...inPVQQPIRPGGH......GSLlnnlS.qvrlmNS..........TSLGG....GAT.....SMGLPN
  162-  193 (46.97/17.21)	MGA.....TPIQ.................vhmS......NM..........ISSGM....TSTPSVISSMSGPG
  194-  239 (47.63/17.56)	QPI.....STQQMVQSTAL......GSF...gS......NTptvtgnstiaVSSSL....TNNQ...SSM.GMG
  240-  273 (34.55/10.57)	QS...........VQSVAQ......GGL.vsgS......QL..........GQGGI....VANQNVMSTL.GP.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09685 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
2) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGL
3) GPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEG
4) MEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSH
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
6) QIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
7) QQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQM
87
178
272
1
146
553
464
142
250
329
79
176
655
540










Molecular Recognition Features






MoRF SequenceStartStop




NANANA