<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09684

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAAADRQLVVAVEGTAALGPYWSTIVAEYVEKIVRSFCASELPGQKLVGTPPELALVVFHTHGPYSAFDVQRSGWTKDVDAFLSWLSGILFSGGGFSEASTCEGLAEALKILQGNPNTTQGHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNLRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEGYRSGTASETIMHLDLVGN
Length595
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.133
Instability index40.99
Isoelectric point6.73
Molecular weight61954.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09684
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.91|      26|      74|     347|     372|       1
---------------------------------------------------------------------------
  311-  341 (32.34/13.64)	TPISNVASQGISalQT..SSPSLISqeaNMGND
  347-  372 (45.10/22.00)	KPIINPVQQPIR..PG..GHGSLLN...NLSQV
  395-  420 (31.44/13.05)	TPIQVHMSNMIS..SGmtSTPSVIS...SMS..
  425-  447 (32.03/13.43)	.PI..STQQMVQ..ST..ALGSFGS...NTPTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.10|      35|      43|     227|     265|       2
---------------------------------------------------------------------------
  227-  265 (60.08/42.13)	SENFMEARtalsRPLHGNLAPNQTI......TKMDTAPAVTMPGP
  272-  300 (53.36/29.32)	SVNAMAGR....QPIVGGIST..........TSVKVEP.TTMP.P
  489-  516 (25.67/ 9.24)	................GGIVANQNVmstlgpTAISSTPAM.MPTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.78|      29|      49|     139|     172|       6
---------------------------------------------------------------------------
  139-  172 (42.25/44.52)	PYPLPTpvycLPTQSTDHKENIETSkEPSIADAE
  190-  218 (50.53/33.68)	PKQLPT....LKAIYNAGKRNLRAA.DPSVDHAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.12|      14|      67|     455|     468|       7
---------------------------------------------------------------------------
  455-  468 (25.39/13.64)	VSSSLTNNQSSMGM
  524-  537 (25.73/13.91)	VNSLGVNNNSAMNM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09684 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQP
2) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGL
3) GPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEG
4) LQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
236
408
502
324
376
281
480
559
372
406










Molecular Recognition Features






MoRF SequenceStartStop




1) KYVKIWE
552
558