<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09683

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEVSLCFALLVSKKI
Length314
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.02
Grand average of hydropathy-0.041
Instability index44.96
Isoelectric point9.62
Molecular weight32052.23
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     255.84|      58|      78|      72|     131|       1
---------------------------------------------------------------------------
    3-   43 (43.69/11.53)	..............GRQPIVGGIS..........TTSVKVEPTTM..PPIVSAPAFSHvtpISNVAS
   72-  131 (99.18/38.20)	KPIinPVQQPIRPGGHGSLLNNLSQV....RLMNSTSLGGGATSMGLPNMGATPIQVH...MSNMIS
  149-  207 (79.20/26.51)	QPI..STQQMVQSTALGSFGSNTPTVtgnsTIAVSSSLTNNQSSMG...MGQSVQSVA...QGGLVS
  212-  241 (33.76/ 7.43)	..............GQGGIVANQN.......VM..STLGPTAIS.STPAMMPTP.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.06|      14|      81|      51|      64|       2
---------------------------------------------------------------------------
   51-   64 (25.60/13.03)	TSSPSLISQEANMG
  135-  148 (26.45/13.69)	TSTPSVISSMSGPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09683 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQS
2) LQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
3) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
4) VNNNSAMNMPITQQHANAQQPPPKYVKIWEG
133
49
101
254
199
97
131
284










Molecular Recognition Features






MoRF SequenceStartStop




1) PKYVKIWE
276
283