<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09682

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMDLTVRSGWTKDVDAFLSWLSGILFSGGGFSEASTCEGLAEALKILQGNPNTTQGHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNLRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length819
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.03
Grand average of hydropathy-0.583
Instability index57.05
Isoelectric point8.80
Molecular weight89270.27
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09682
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     164.36|      15|      15|     736|     750|       1
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  662-  676 (30.79/ 6.45)	QQQQ...PSQMQQQMQSM
  688-  704 (31.74/ 6.92)	QHQQ.qqMQHQQQQMQQM
  712-  728 (32.26/ 7.18)	QQQQ.qqIQPQQQQMQQM
  729-  746 (34.59/ 8.33)	QQQQqqqMQPQQQQMQQM
  747-  763 (34.99/ 8.53)	QQQQ.qqMQPQQQQMQQM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     593.06|     135|     138|     122|     258|       2
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   16-  105 (104.20/40.47)	.......................................FLSWLSGILFSG.........GGFSEASTCEGLAEAL.KILQGNPnTTQGHQ......NHEAQK.HCIL..VAAS......NPYPLPtPVYCLPTQStdHKEN.........IE.....TSKEPSI.ADA
  122-  258 (223.71/100.74)	ISPKQLPTLKAiyNAGKRNLRAADPSVDHAKNP.....HFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAP.AVTMPGP.TSNGNSS....VNAMAGR.QPIV..GGISTTSVKVEPTTMP.PIVSAPAFS..HVTP.........IS.....NVASQGI.SAL
  261-  406 (158.58/66.18)	SSP.SLISQEA..NMGNDNVQEHKPIINPVQQPirpggHG.SLL.NNLSQVRLMNSTSLGGG.ATSMGLPNMGATPiQVHMSNM.ISSGMTStpsvISSMSGPgQPI.......STQQMVQSTAL.......GSFG..SNTPtvtgnstiaVSssltnNQSSMGMgQSV
  407-  484 (106.57/41.94)	QSVAQ.........GG...L......VSGSQLG..........................QGGIVANQNV..MSTL.......GP.TA..ISS....TPAMMPT.PGMVpqTGVNSLGVNNNSAMNM.PITQQHANA..QQPP...........................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09682 with Med25 domain of Kingdom Viridiplantae
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