<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09681

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEVTALLSRNNGS
Length357
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.01
Grand average of hydropathy-0.155
Instability index44.54
Isoelectric point9.89
Molecular weight36365.80
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09681
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     323.54|      44|      46|     187|     230|       1
---------------------------------------------------------------------------
   19-   60 (38.64/10.54)	QTI..T..KMDTAPAV.TMPG...P..TSN..GNSSV...N.AMAgrqpivGGISTTS
   61-  109 (42.51/12.34)	VKV..EPTTMPPIVSA.PAFSHVTPisNVAsqGISALQTSSpSLI......SQEANMG
  117-  161 (42.95/12.55)	KPIinPVQQPIRPGGH.GSLLNNLS..QV......RLMNST.SLG...ggaTSMGLPN
  162-  193 (39.25/10.82)	MGA..TPIQVHMSNMI.SSGMTSTP..SV.....................iSSMSGPG
  194-  239 (66.20/23.40)	QPI..STQQMVQSTAL.GSFGSNTP..TVT..GNSTIAVSS.SLT...nnqSSM.GMG
  240-  274 (42.32/12.25)	QS........VQSVAQ.GGLVSGSQ....L..GQGGIVANQ.NVM......STL.GPT
  275-  317 (51.68/16.62)	AIS..STPAMMPTPGMvPQTGVNSL..GVN..NNS..AMNM.PIT......QQHANAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09681 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
2) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQS
3) GPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEG
4) MEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSH
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
87
178
272
1
146
142
244
329
79
176










Molecular Recognition Features






MoRF SequenceStartStop




1) PPKYVKIWEGTL
320
331