<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09680

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length610
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.02
Grand average of hydropathy-0.684
Instability index63.19
Isoelectric point9.61
Molecular weight66994.41
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09680
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     245.04|      32|      33|     441|     472|       2
---------------------------------------------------------------------------
  410-  441 (53.67/ 9.34)	QQLQQFQQQQQ....QLQQHmhmQPQGLPLQQ...SQM.Q
  462-  496 (64.26/13.34)	QQMQSMQQQMQpmqqQMQHQ...QQQMQH.QQQQMQQM.Q
  497-  526 (58.72/11.25)	QQQQQQQQQQQ....QIQPQ...QQQMQQMQQQQQQQ...
  542-  573 (68.39/14.89)	QQMQPQQQQMQ....QMQQQ...QQQMQPQQQQQP.QMvG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     370.23|      63|      64|     108|     170|       3
---------------------------------------------------------------------------
    1-   57 (60.00/18.54)	..MAG...R.......QPI........VGGISTTSVKVE...............PTTM..PPIVS..APAFSHvtpISNVASQGIsalqTSSPSLI
   58-  141 (85.81/29.45)	SQEAN..MGndnvqehKPI.inPVQQPIRPGGHGSLLNNLSqvrlmnstslggGATSMGLPNMGA..TPIQVH...MSNMISSGM....TSTPSVI
  142-  188 (62.42/19.56)	SSMSG..PG.......QPI...STQQMVQSTALGSFGSNTP.........tvtGN........ST....IAV.........SSSL....TNNQ...
  189-  237 (59.82/18.46)	SSM.G..MG.......QS.........VQSVAQGGLVSGSQ.........lgqG.........GI..VANQNV...MSTLGPTAI....SSTPAM.
  238-  279 (54.63/16.27)	..MPT..PG.................MVPQT......................GVNSLGVNNNSAmnMPITQQ...HAN....AQ....QPPPKYV
  284-  333 (47.55/13.28)	GTLSGqrQG.......QPViicKLEGYRSGTASETLAADWP..............ETMQIVRLIA.....QEH...MNN.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.64|      19|     138|     442|     460|       6
---------------------------------------------------------------------------
  442-  460 (38.67/11.75)	LQQQQPQMQPMQ....QQQPSQM
  581-  603 (31.97/ 8.14)	MQGHNRAVQMMQgkitPQGPGSM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09680 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGL
2) GPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEG
3) LQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
4) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
5) QIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
6) QQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQM
133
227
49
101
508
419
205
284
97
131
610
495










Molecular Recognition Features






MoRF SequenceStartStop




NANANA