<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09678

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAAADRQLVVAVEGTAALGPYWSTIVAEYVEKIVRSFCASELPGQKLVGTPPELALVVFHTHGPYSAFDVQRSGWTKDVDAFLSWLSGILFSGGGFSEASTCEGLAEALKILQGNPNTTQGHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNLRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length825
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.429
Instability index51.59
Isoelectric point8.16
Molecular weight89043.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09678
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.02|      19|      19|     693|     711|       1
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  688-  709 (33.87/ 6.51)	.QglplQQSQMQ.LQQQ..QPQM..QPM
  710-  731 (35.12/ 6.97)	QQ...qQPSQMQ.QQMQsmQQQM..QPM
  732-  752 (35.77/ 7.21)	QQqmqhQQQQMQ.HQQQ..Q..M..QQM
  770-  791 (35.26/ 7.02)	QQ....QQQQMQpQQQQ..QPQMvgTGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     509.07|      84|      86|     278|     361|       2
---------------------------------------------------------------------------
   92-  155 (56.73/20.31)	......................................SGGGFSEASTCEGLA.EALKILQ.GNPN.....TTQGHQN.....HEAQKhcilvaASNPY.PLPTPVY.cLPTQSTD
  163-  249 (69.52/26.58)	SKEPSIADAETvaksfaqCSVSlsvISPKQL..P.TL.........KAIYN...AGKRNLRAADPS......VDHAKNphflvLLSEN......FMEARtALSRPLH..GNLAPNQ
  278-  361 (141.45/61.86)	GRQPIVGGIST.......TSVK...VEPTTM..P.PIVSAPAFSHVTPISNVASQGISALQTSSPS.....LISQEAN.....MGNDN......VQEHK.PIINPVQ..QPIRPGG
  367-  436 (94.96/39.06)	NNLSQVRLMNS.......TSLG...GGATSMglP.NMGATPIQVH...MSNMISSGM....TSTPS.....VISSMSG.....PG.............Q.PI..STQ..QMVQSTA
  442-  479 (48.06/16.06)	SNTPTVTGNST.......IAV.........................................SS.S.....LTNNQSS.....MGMG...................QsvQSVAQGG
  483-  563 (98.35/40.72)	GSQLGQGGIVA.......NQ.N...VMSTLG..PtAISSTPAM.MPTP.GMVPQTGVNSLGVNNNSamnmpITQQHA..........N......AQQPP.PKYVKIW..EGYRSG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.04|      15|      86|     665|     680|       3
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  665-  680 (26.87/11.63)	QQQQlQQFQQQQQQLQ
  753-  767 (31.17/10.70)	QQQQ.QQQQQQQQQIQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09678 with Med25 domain of Kingdom Viridiplantae
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