<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09675

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAAADRQLVVAVEGTAALGPYWSTIVAEYVEKIVRSFCASELPGQVQRSGWTKDVDAFLSWLSGILFSGGGFSEASTCEGLAEALKILQGNPNTTQGHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNLRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGTLSGQRQGQPVIICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length861
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.03
Grand average of hydropathy-0.539
Instability index55.29
Isoelectric point8.58
Molecular weight93718.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09675
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     164.36|      15|      15|     778|     792|       1
---------------------------------------------------------------------------
  704-  718 (30.79/ 6.34)	QQQQ...PSQMQQQMQSM
  730-  746 (31.74/ 6.78)	QHQQ.qqMQHQQQQMQQM
  754-  770 (32.26/ 7.03)	QQQQ.qqIQPQQQQMQQM
  771-  788 (34.59/ 8.11)	QQQQqqqMQPQQQQMQQM
  789-  805 (34.99/ 8.30)	QQQQ.qqMQPQQQQMQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     593.06|     135|     138|     164|     300|       2
---------------------------------------------------------------------------
   58-  147 (104.20/38.80)	.......................................FLSWLSGILFSG.........GGFSEASTCEGLAEAL.KILQGNPnTTQGHQ......NHEAQK.HCIL..VAAS......NPYPLPtPVYCLPTQStdHKEN.........IE.....TSKEPSI.ADA
  164-  300 (223.71/96.14)	ISPKQLPTLKAiyNAGKRNLRAADPSVDHAKNP.....HFLVLLSENFMEARTALSRPLHGNLAPNQTITKMDTAP.AVTMPGP.TSNGNSS....VNAMAGR.QPIV..GGISTTSVKVEPTTMP.PIVSAPAFS..HVTP.........IS.....NVASQGI.SAL
  303-  448 (158.58/63.27)	SSP.SLISQEA..NMGNDNVQEHKPIINPVQQPirpggHG.SLL.NNLSQVRLMNSTSLGGG.ATSMGLPNMGATPiQVHMSNM.ISSGMTStpsvISSMSGPgQPI.......STQQMVQSTAL.......GSFG..SNTPtvtgnstiaVSssltnNQSSMGMgQSV
  449-  526 (106.57/40.20)	QSVAQ.........GG...L......VSGSQLG..........................QGGIVANQNV..MSTL.......GP.TA..ISS....TPAMMPT.PGMVpqTGVNSLGVNNNSAMNM.PITQQHANA..QQPP...........................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09675 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPLHGNLAPNQTITKMDTAPAVTMPGPTSNGNSSVNAMAGRQP
2) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGL
3) GPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEG
4) LQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
6) QIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
7) QQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQM
212
384
478
300
352
759
670
257
456
535
348
382
861
746










Molecular Recognition Features






MoRF SequenceStartStop




NANANA