<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09671

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMQYSVNAMAGRQPIVGGISTTSVKVEPTTMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGLVSGSQLGQGGIVANQNVMSTLGPTAISSTPAMMPTPGMVPQTGVNSLGVNNNSAMNMPITQQHANAQQPPPKYVKIWEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNHHGFLVQLQEKKLCAVIQLPSQTLLLSMADKAGRLIGMLFPGDMVVFKPQASTQQTPMQQQQLQQFQQQQQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQMQQQQQQQQQQQQQIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
Length599
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.03
Grand average of hydropathy-0.692
Instability index63.23
Isoelectric point9.59
Molecular weight65879.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09671
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.19|      16|      16|     516|     531|       1
---------------------------------------------------------------------------
  474-  489 (41.43/ 8.81)	MQHQQQQMQQMQQQQQ
  498-  513 (40.44/ 8.38)	IQPQQQQMQQMQQQQQ
  516-  531 (43.16/ 9.55)	MQPQQQQMQQMQQQQQ
  533-  548 (43.16/ 9.55)	MQPQQQQMQQMQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     372.14|      78|      82|     109|     187|       3
---------------------------------------------------------------------------
    5-   53 (58.50/15.68)	......VNAMAGR........QPI.......................VGGISTTSVkvePTTMPPIVSA...PAFShV..TPI.....SNVASQGI
   58-  141 (112.88/39.46)	TSSPSLISQEANMGndnvqehKPIinPVQQPIRPGGHGSLL.NNLSQV....RLMN...STSLGGGATSMGLPNMG.A..TPI.QVHmSNMISSGM
  142-  212 (121.65/40.13)	TSTPSVISSMSGPG.......QPI..STQQMVQSTALGSFG.SNTPTVTGNSTIAV...SSSLTNNQSSMG...MG.Q..S.V.Q....SVAQGGL
  213-  275 (79.11/23.50)	VS.....GSQLGQG........GI..VANQNVMST.LGPTAiSSTPAMMPTPGMVP...QT....GVNSLGVNNNS.AmnMPItQQH.........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09671 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GMTSTPSVISSMSGPGQPISTQQMVQSTALGSFGSNTPTVTGNSTIAVSSSLTNNQSSMGMGQSVQSVAQGGL
2) LQTSSPSLISQEANMGNDNVQEHKPIINPVQQPIRPGGHGSLLNNLSQV
3) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
4) QIQPQQQQMQQMQQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQMQQMQQQQQQMQPQQQQQPQMVGTGMGQQFMQGHNRAVQMMQGKITPQGPGSMPGGGFLP
5) QQQLQQHMHMQPQGLPLQQSQMQLQQQQPQMQPMQQQQPSQMQQQMQSMQQQMQPMQQQMQHQQQQMQHQQQQMQQM
140
56
108
497
408
212
104
138
599
484










Molecular Recognition Features






MoRF SequenceStartStop




NANANA