<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09655

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMEYRLYLELLKRHGFNFHHQMKAANFRKIMDIIERNLRLSKIFGISTCEPGVFVVHFILCIIWQLIDVVLDDEGLLELTPEKNAQWPTRPEDVSTFEGTFTEQRTEKIKKLQKMNTVTTMELIEHLLRDKVITRILSLARENMQSHWGAFTNRLHLLATNSSTLQNSAISLEPFQHLILGDCDAYGETKHNVHKRFHQIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDCSIAATNSIEILSGLVKALQAVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIMEADSLCNETELNSHVNEKKAIGNLRNELMLSLQILGDYESLLVPPSCVIPAANQAATKAAMFISGISINNGYMDNVNGMNYTGNMRHLIVESCISRQLLDTSAYYWPGYIMNHANSTSHTLPSQLAGWSSFMKGAPLTQPLVNMLVSTPASSLAEVDKLFEVAVDGSDDDSISAATVLCGATLLRGWNFQEHTVRLVVKLLSPSDPIDNSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAASLMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLSKQRNGQRQSQVSTSHPSSGNPIFMDSFPKLKLWYQQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSIGSLSGSSSISNSSSPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGVDVPKLVTGGSSSGTLPLPLAAFVSLTITYKLDKASECFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRQRPDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSAQNLDQGGASGGVVYKLGGHALAYFAVYSGMLAWGIDQTPVSRRRERVMRSHLGFLASALAGKIFLGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGPEAMGTAAEMILGREL
Length1215
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.122
Instability index40.01
Isoelectric point6.65
Molecular weight132715.67
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09655
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.99|      27|      69|     649|     677|       1
---------------------------------------------------------------------------
  649-  677 (47.44/35.39)	GQRQSQVSTSHPSSgnPIFMDS..FPKLKLW
  721-  749 (47.55/28.57)	GSLSGSSSISNSSS..PGGDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.54|      33|     341|     611|     644|       2
---------------------------------------------------------------------------
  543-  576 (29.50/15.05)	.....DYAPIFSfhGLIPELAAsLMA...ICEVFGclSPSVS
  611-  644 (54.66/40.26)	YCiMGDGAPVGS..QLTPEYLL.LLR...NSQVLS..SSSLS
  965-  998 (49.38/31.23)	YC.PGGFSPVAP..GIL..YLR.IFRcikDCSILA..EDILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.47|      12|     341|      56|      67|       3
---------------------------------------------------------------------------
   56-   67 (25.38/15.55)	HFIL..CIIWQLID
  396-  409 (18.08/ 9.04)	HLIVesCISRQLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.00|      35|      73|    1104|    1138|       4
---------------------------------------------------------------------------
 1104- 1138 (61.12/35.43)	SGMLAWGIDQTP..VSRRRERVMRSHLGFLASALAGK
 1153- 1176 (20.65/ 7.41)	SGFLGLVVECTPcwVQEVDLRVLK.............
 1180- 1213 (56.23/32.05)	SGLRHWGEDELA..VALLR.RAGPEAMGTAAEMILGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.99|      14|     924|      97|     110|       6
---------------------------------------------------------------------------
   97-  110 (24.54/15.33)	EGTFTEQRTEKIKK
 1009- 1022 (25.46/16.14)	ETTVPRQRPDKLKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.62|      22|      67|     773|     796|       8
---------------------------------------------------------------------------
  773-  796 (29.41/23.04)	PReLATGLKDlADFLPASLATIVS
  843-  864 (39.21/21.48)	PK.LVTGGSS.SGTLPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.62|      44|      46|     177|     222|      11
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  177-  222 (72.60/56.29)	LILGDCDAYGETKHNVHKRFHQIVasNPLSSPNGRCLGASYSALWI
  226-  269 (74.02/51.06)	MYLEDCLDCSIAATNSIEILSGLV..KALQAVNRSTWHDAFLALWV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09655 with Med33 domain of Kingdom Viridiplantae
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