<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09654

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMLLSITTLAIADIIMEADSLCNETELNSHVNEKKAIGNLRNELMLSLQILGDYESLLVPPSCVIPAANQAATKAAMFISGISINNGYMDNVNGMNYTGNMRHLIVESCISRQLLDTSAYYWPGYIMNHANSTSHTLPSQLAGWSSFMKGAPLTQPLVNMLVSTPASSLAEVDKLFEVAVDGSDDDSISAATVLCGATLLRGWNFQEHTVRLVVKLLSPSDPIDNSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAASLMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLSKQRNGQRQSQVSTSHPSSGNPIFMDSFPKLKLWYQQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSIGSLSGSSSISNSSSPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGVDVPKLVTGGSSSGTLPLPLAAFVSLTITYKLDKASECFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRQRPDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSAQNLDQGGASGGVVYKLGGHALAYFAVYSGMLAWGIDQTPVSRRRERVMRSHLGFLASALAGKIFLGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGPEAMGTAAEMILGREL
Length921
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.198
Instability index39.78
Isoelectric point6.72
Molecular weight99005.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09654
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.99|      27|      69|     355|     383|       1
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  355-  383 (47.44/30.92)	GQRQSQVSTSHPSSgnPIFMDS..FPKLKLW
  427-  455 (47.55/24.94)	GSLSGSSSISNSSS..PGGDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.37|      19|     152|     726|     744|       3
---------------------------------------------------------------------------
  726-  744 (34.08/20.48)	LKKTKYGMRH.GQVSLSAAM
  881-  900 (27.29/15.08)	LKRLSSGLRHwGEDELAVAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.83|      26|     156|     595|     622|       5
---------------------------------------------------------------------------
  595-  622 (45.34/29.64)	LAASCPW..PSMAIVAALWTQKVKRWsdFL
  753-  780 (42.48/21.99)	LGATLVWlsGGTALVQSLIQEMLPSW..FL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.39|      38|     207|     102|     139|      10
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  102-  139 (70.13/44.66)	HLIVESCISRQLLDTSAYYWPGYIMNHANS...TSHTLPSQ
  312-  352 (62.26/38.81)	HPPLEYCIMGDGAPVGSQLTPEYLLLLRNSqvlSSSSLSKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.69|      22|     128|     661|     684|      12
---------------------------------------------------------------------------
  661-  684 (34.11/27.86)	GGVASLLGhGYCPGGFSpVAPGIL
  792-  813 (41.58/23.15)	GGVVYKLG.GHALAYFA.VYSGML
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09654 with Med33 domain of Kingdom Viridiplantae
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