<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09653

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMLNVILSGISAVDYAPIFSFHGLIPELAASLMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLSKQRNGQRQSQVSTSHPSSGNPIFMDSFPKLKLWYQQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSIGSLSGSSSISNSSSPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGVDVPKLVTGGSSSGTLPLPLAAFVSLTITYKLDKASECFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRQRPDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSAQNLDQGGASGGVVYKLGGHALAYFAVYSGMLAWGIDQTPVSRRRERVMRSHLGFLASALAGKIFLGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGPEAMGTAAEMILGREL
Length685
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy0.234
Instability index43.73
Isoelectric point8.60
Molecular weight73536.25
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09653
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.99|      27|      69|     119|     147|       1
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  119-  147 (47.44/28.67)	GQRQSQVSTSHPSSgnPIFMDS..FPKLKLW
  191-  219 (47.55/23.15)	GSLSGSSSISNSSS..PGGDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.00|      35|      73|     574|     608|       3
---------------------------------------------------------------------------
  574-  608 (61.12/37.06)	SGMLAWGIDQTP..VSRRRERVMRSHLGFLASALAGK
  623-  646 (20.65/ 7.91)	SGFLGLVVECTPcwVQEVDLRVLK.............
  650-  683 (56.23/33.54)	SGLRHWGEDELA..VALLR.RAGPEAMGTAAEMILGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.62|      22|      71|     243|     266|       4
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  243-  266 (29.41/26.81)	PReLATGLKDlADFLPASLATIVS
  313-  334 (39.21/25.02)	PK.LVTGGSS.SGTLPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.33|      34|     301|     154|     187|       5
---------------------------------------------------------------------------
  154-  187 (61.69/41.10)	CLASTLSGLAHGTPVRNNVDSLLNQM....FRKA...NKGG
  477-  496 (25.77/12.84)	........IAETTVPRQRPDKL..........KK...TKYG
  516-  553 (41.87/25.50)	SLGATLVWLSGGTAL...VQSLIQEMlpswFLSAqnlDQGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09653 with Med33 domain of Kingdom Viridiplantae
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