<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09652

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMATSAPPPSSAPWLEWAAEYTKAAQAEARPPPEWAARVAAAAAAAGESEDVPWSAGLAEVLARALFPGGGGGGGGAAPAAAAWKYAEAALAARLASPALLLALLSTRVIPHRLSRPMEYRLYLELLKRHGFNFHHQMKAANFRKCAFPLSDCSLYFLNTMLKSVVWNENQSNRIMDIIERNLRLSKIFGISTCEPGVFVVHFILCIIWQLIDVVLDDEGLLELTPEKNAQWPTRPEDVSTFEGTFTEQRTEKIKKLQKMNTVTTMELIEHLLRDKVITRILSLARENMQSHWGAFTNRLHLLATNSSTLQNSAISLEPFQHLILGDCDAYGETKHNVHKRFHQIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDCSIAATNSIEILSGLVKALQAVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIMEADSLCNETELNSHVNEKKAIGNLRNELMLSLQILGDYESLLVPPSCVIPAANQAATKAAMFISGISINNGYMDNVNGMNYTGNMRHLIVESCISRQLLDTSAYYWPGYIMNHANSTSHTLPSQLAGWSSFMKGAPLTQPLVNMLVSTPASRCEHTVRLVVKLLSPSDPIDNSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAASLMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLSKQRNGQRQSQVSTSHPSSGNPIFMDSFPKLKLWYQQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSIGSLSGSSSISNSSSPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGVDVPKLVTGGSSSGTLPLPLAAFVSLTITYKLDKASECFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRQRPDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSAQNLDQGGASGGVVYKLGGHALAYFAVYSGMLAWGIDQTPVSRRRERVMRSHLGFLASALAGKIFLGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGPEAMGTAAEMILGREL
Length1323
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy0.114
Instability index41.47
Isoelectric point7.36
Molecular weight143799.32
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.99|      27|      69|     757|     785|       1
---------------------------------------------------------------------------
  757-  785 (47.44/34.65)	GQRQSQVSTSHPSSgnPIFMDS..FPKLKLW
  829-  857 (47.55/27.96)	GSLSGSSSISNSSS..PGGDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.62|      44|      46|     322|     367|       2
---------------------------------------------------------------------------
  322-  367 (72.60/48.63)	LILGDCDAYGETKHNVHKRFHQIVasNPLSSPNGRCLGASYSALWI
  371-  414 (74.02/44.09)	MYLEDCLDCSIAATNSIEILSGLV..KALQAVNRSTWHDAFLALWV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.00|      35|      73|    1212|    1246|       4
---------------------------------------------------------------------------
 1212- 1246 (61.12/39.78)	SGMLAWGIDQTP..VSRRRERVMRSHLGFLASALAGK
 1261- 1284 (20.65/ 8.24)	SGFLGLVVECTPcwVQEVDLRVLK.............
 1288- 1321 (56.23/35.98)	SGLRHWGEDELA..VALLR.RAGPEAMGTAAEMILGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.32|      15|      20|      90|     104|       5
---------------------------------------------------------------------------
   90-  104 (23.45/13.63)	LAARLASPA...LLLALL
  109-  126 (22.87/13.08)	IPHRLSRPMeyrLYLELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.95|      52|     886|     189|     255|       6
---------------------------------------------------------------------------
  189-  255 (74.50/89.55)	GISTCEPGVFVVHFILCI..IWQLIDVVLddeGLLELTPeknaqwptrpEDVStfEGTFTEQRTEKIKK
 1077- 1130 (86.45/60.35)	GFSPVAPGILYLRIFRCIkdCSILAEDIL...SLLMLSV..........KDIA..ETTVPRQRPDKLKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.62|      22|      71|     881|     904|       8
---------------------------------------------------------------------------
  881-  904 (29.41/24.59)	PReLATGLKDlADFLPASLATIVS
  951-  972 (39.21/22.91)	PK.LVTGGSS.SGTLPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.06|      16|      35|      30|      45|      11
---------------------------------------------------------------------------
    6-   27 (22.80/ 9.76)	PPPssapwlEWAAEYTKAAQAE
   30-   45 (31.04/16.17)	PPP......EWAARVAAAAAAA
   50-   64 (23.25/10.11)	DVP.......WSAGLAEVLARA
   67-   82 (26.97/13.01)	PGG......GGGGGGAAPAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.93|      13|     886|     133|     145|      13
---------------------------------------------------------------------------
  133-  145 (26.46/18.88)	FHHQMKAAN..FRKC
 1033- 1047 (20.47/12.92)	FHHNNDAVVqlLRSC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09652 with Med33 domain of Kingdom Viridiplantae
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