<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09649

Description U-box domain-containing protein 33
SequenceMNKILLTYLAFCHRAKVQARLLVTENGQIHDGILSLVDHHRITKLVMGSTPDNCFKLKYGKESLMASSAPAFCQIWFVWRGRHIWTREASAATDNATPVQYQYDVMTTKRIRFSSYTDNTGAILDEGYPAHEALTTVDLNQGVVSDCGQSNDYEAFGEHEVNHLRGMSISDWQDDTEPELNSTFWSRSSIHADTLQLDPKEVLANVKQLMMEADRSRKEAFSELMKRKETESKAASAFAKTKDSDSAKKHEIEMREELEVVLVDTRKQHEDLIKNKERAVSVLDSSTRRSAILDAHAEKIKLQIDEFSAELEVIQSSIETLRQKKLKMQRLESKHIDLDKGCTYSHATLSNCASNAFGDDLYGFREFTVLDMQSATCKFSESFRMWSQGRGCVYKGEIMNRTVMIYKLHCHSIESVRQFQQEVYILSNVRHPHLVTLVGACPEALCLVYEYLPNGSLHDRLFSRRSSRHLPWRIRARIVAEISDALLFLHSCKPQTIVHGNLKLENILLDTECHCKIADFGISRLFTGDVKDYPSGGSEPPEGSFPYADPEYMRSKVLTPKSDVYCFGTVILQLLTGRQEPARRLAGEVRCAMACGKLSSILDPAAGHWPMEVAGRLAELGLRCSEDRSRDRPDLTAETVRELEQLHLTREEEQAPSSFLCPIMQEIMHDPQVCAADGVTYEGRAIRERMELETGQGTAPLNNLKLEHLSLTPNHALRFAIQDWLRRSRR
Length730
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.434
Instability index48.54
Isoelectric point6.29
Molecular weight82906.37
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09649
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.93|      47|     198|     137|     187|       1
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  102-  131 (36.13/18.70)	...........................QYDVMTTKRIRFSSYTDNTGAILDEGY..PAH
  137-  187 (76.36/63.56)	VDLNQG......VVSDCGqSNdyeAFGEHEVNHLRGMSISDWQDDTEPELNSTF..WSR
  336-  388 (68.43/44.27)	IDLDKGctyshaTLSNCA.SN...AFGD.DLYGFREFTVLDMQSAT.CKFSESFrmWSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     178.65|      57|     390|       1|      64|       3
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    1-   64 (81.75/80.72)	MNKILLTYLAFCHRAKvQARLLVTEngqIHdgILSLVDHHRITKLVmGSTPDN.CFKLKY.GKESL
  399-  457 (96.90/67.15)	MNRTVMIYKLHCHSIE.SVRQFQQE...VY..ILSNVRHPHLVTLV.GACPEAlCLVYEYlPNGSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.35|      22|     306|     290|     311|       4
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  290-  311 (35.64/25.50)	SAILDAHAEKIKLQIDEFSAEL
  599-  620 (39.72/29.28)	SSILDPAAGHWPMEVAGRLAEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09649 with Med32 domain of Kingdom Viridiplantae
Unable to open file!