<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09645

Description U-box domain-containing protein 33
SequenceMANAGTGRGGQTPESTHQHTLRTAVSNTREAAESPPLAVDDKIFVAVPEELKHGKSNLLWALHNLARDASSSRIAIAHVHVPAQMITTNCSTVPEEINLSDYRQINILCTKFCHEVNCDIVAIQNDDIANGVINLISLHGIKKLVVGAASDKKYSKTMKAPTSNTALKIMEGAASPCKIWFTCKGSLIVVKGGNADTPTVPSSQNTAPLPVFNISSQMRSMMIHNSKDKASSSNLSMANDMGESRTDVPCSLYENAGDTLLQSFEDVESTFKGKPRRLRSLEDFTVDSGRSQTQNSDSSCPPNDGAASISRTAVVDNDNISEVASNMHLSTNNSYDHISPTPHDLDKLKETLTKIQLLEKEVQEECNKQQNAERELQSALQKSKELEKSYMNELRQQKALKEMLEKQRQEIDVMRRQQEEAYAALYNANEQKVTLEQRISEIELYVKDKEDELARNKHQLEALQADCDRIQQERDAAIREATELHEKNRLGVFAPSEALNTKFSLIELQQATQDFNPMFKVGEGGFGSVYKGFLRNTTVAIKLLHPESMQRQSEFHQEASVLSTVRHPNLVTLIGTCPEAFGLVYEFFPNGSLEDCLGCKNNTRPLTWQTRTRIIGEMCSALIFLHSNKPHPVVHGDLKPDHILLDANYSSKLGDFGISRLLIQTNTCSTNLYRTTNPRGTFSYMDPEFLTTGELTPRSDVYSFGIIILRLLTGKQPQRIAEIVEDAIEKENLHSIIDSTAGSWPFIQANQLAHIALRCAELSRRRRPDLTVDVWKVVEPLMKAASMTARPLSCTAPSDETCIPSYFICPILQEIMRDPYVAADGFTYEGEAIRGWLDSGHSTSPMTNLDLERSLLVPNRALRSAILEWNQQERQ
Length875
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.450
Instability index48.21
Isoelectric point5.80
Molecular weight97575.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09645
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.54|      33|      46|     356|     388|       1
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  343-  383 (46.46/34.57)	HDLDK.....lketltkiQLLEKEVQE...ECNKQQNAERELQSALQKS
  384-  432 (40.08/28.69)	KELEKsymnelrqqkalkEMLEKQRQEidvMRRQQEEAYAALYNANEQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.28|      16|      47|     240|     257|       3
---------------------------------------------------------------------------
  240-  257 (26.85/22.53)	DMGESRT...DVPCSlyENAG
  287-  305 (27.43/15.60)	DSGRSQTqnsDSSCP..PNDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.38|      42|     576|      53|     106|       4
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   53-  106 (53.98/74.12)	HGKsnlLWALHNLArDASSSRiAIAHVHVPAQMITTN.CSTvpeeiNLsdYRQIN
  635-  677 (73.40/52.25)	HGD...LKPDHILL.DANYSS.KLGDFGISRLLIQTNtCST.....NL..YRTTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.48|      44|     278|     437|     489|       5
---------------------------------------------------------------------------
  437-  489 (61.44/53.66)	QRISEIelyVKD...KEdelarNKHQ.LEALQADCDRIQQERDA..AIREAtELHEKNR
  718-  767 (64.04/34.94)	QRIAEI...VEDaieKE.....NLHSiIDSTAGSWPFIQANQLAhiALRCA.ELSRRRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09645 with Med32 domain of Kingdom Viridiplantae
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