<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09641

Description Uncharacterized protein
SequenceMAATGGGGGGGGRHWIEAETPDFRARMRRIYLPTKLATYFQPKYSPNSLEAQTLIARLEEDAFRGTNSKVEYVKKISDKVVTMLRNKTDELQRRAQLQSQLQQAIEAQALHGGSSSVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQADVSKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMMGSTREYDLEEIFCKIKSWKDAYFPQFLELDRRVVLPTLTEEQFSSLPEAKANLYIRKADFKKSIRRILNLMSLQKSDVHEGLKVDLPKYEKLIHHFLALLERNKTCHAKMNTGYQLQNCDEQRKAINLTGNASPITGGTSREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEACLVLPVKLFVPADYPRSSPVLRNDEGDEVPRKNSSAISALADVVFRHALDALPEPRSIEAMARAWDASVRKVVTRFARQQGGGTISSMFGGWKRCAAA
Length891
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.487
Instability index63.46
Isoelectric point9.11
Molecular weight97315.13
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09641
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.75|      39|      39|     510|     548|       1
---------------------------------------------------------------------------
  510-  531 (26.96/ 9.08)	..........................................................ASFS.SPGSLQS.SLQSWSSSMLE
  532-  568 (50.01/22.82)	SLRPSPLANPV..VAPASP...........................................cAPVPIISmDVDSITAFLMD
  572-  647 (31.78/11.95)	AAAPPPKANGSnqVTRTEPivpasplqadiaaghgevqarggdgtpvtkrpidrlmdaIRSS.SPGALHS.SINSIRS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.32|      35|      35|     103|     137|       2
---------------------------------------------------------------------------
   58-  100 (27.64/12.59)	..LEED.AFRGTNSKVeyvkkISDKVVTMLRNKTDelqrraqlQS...Q
  103-  137 (58.48/34.35)	QAIEAQ.ALHGGSSSV.....MPEAVMVASRRPTS........QSMAPQ
  140-  170 (43.20/23.57)	GLVPNQnMLHPCTSNM.....QIE....VEKKHHG........QDHYP.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.48|      38|      39|     205|     242|       3
---------------------------------------------------------------------------
  173-  202 (46.06/19.05)	.QPMGITRAGPGVQSGAWPMQSGA.....S.......QSESQY
  205-  242 (67.65/30.88)	RQPQATNFVGYSLASGSKPVIRPN.....SQHNHPLGQNDSAI
  245-  278 (39.86/15.65)	RQPQITRL.N........EILRANqqemgTQRYQMLGAQQADV
  296-  317 (30.90/10.75)	RQ...TGFLHPPFKV.SEPMTPPV.....QQ............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.35|      32|      39|     650|     683|       4
---------------------------------------------------------------------------
  650-  683 (52.22/36.38)	SMSDIVPHGKI.GTML..DCNSlQQQGGCNTVNkMKR
  690-  724 (49.13/26.30)	SRSQSLPLGSMdGSCMsfECGA.SDSGSSSEVN.FKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.65|      27|      30|     372|     401|       7
---------------------------------------------------------------------------
  372-  401 (40.04/41.40)	QFSSLPEakaNLYIRKADFKKSIRRILNLM
  404-  430 (45.61/37.21)	QKSDVHE...GLKVDLPKYEKLIHHFLALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.81|      25|      49|     755|     779|       8
---------------------------------------------------------------------------
  755-  779 (47.41/29.63)	DYCGMDGIPRCDGGTTI.KLSYSAVS
  806-  831 (39.40/23.39)	DYPRSSPVLRNDEGDEVpRKNSSAIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.63|      22|     330|      13|      34|       9
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   13-   34 (43.12/29.99)	RHWIEAETPDFRARMRRIYLPT
  346-  367 (41.51/28.61)	KSWKDAYFPQFLELDRRVVLPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09641 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AINLTGNASPITGGTSREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESA
2) LMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRS
3) MLRNKTDELQRRAQLQSQLQQAIEAQALHG
4) SKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMM
5) SVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQA
455
566
83
279
116
510
632
112
330
276










Molecular Recognition Features






MoRF SequenceStartStop




NANANA